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Report for CCDS54106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54106.1 Public Homo sapiens 17 CCT6B 24 110 108 CCDS HistoryNCBI Gene:10693Re-query CCDS DB by CCDS ID:54106.1Re-query CCDS DB by GeneID:10693See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54106.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421975.7 ENSP00000398044.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421975.7Link to Ensembl Protein Viewer:ENSP00000398044.3Re-query CCDS DB by Nucleotide ID:ENST00000421975Re-query CCDS DB by Protein ID:ENSP00000398044
Original member Current member NCBI NM_001193529.3 NP_001180458.1 Accepted alive Link to Nucleotide Sequence:NM_001193529.3Link to Protein Sequence:NP_001180458.1Re-query CCDS DB by Nucleotide ID:NM_001193529Re-query CCDS DB by Protein ID:NP_001180458Link to BLAST:NP_001180458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180458.1 493 Q92526-3 493 100% 0 0

Chromosomal Locations for CCDS 54106.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34928048 34928117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34928962 34929034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34930949 34931051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34932367 34932500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34939183 34939330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34939617 34939713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34940539 34940621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34942484 34942643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34951950 34952053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34954426 34954599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34958560 34958694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34959587 34959650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34961257 34961393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGCTGCGATAAAGGCCGTCAACTCCAAGGCTGAGGTGGCGCGGGCCCGGGCAGCTTTGGCTGTCAATA
TATGCGCCGCCCGAGGGCTGCAGGATGTGCTGCGGACCAACTTGGGTCCTAAAGGCACCATGAAAATGCT
TGTTTCTGGTGCAGGTGACATCAAACTCACCAAAGATGGCAATGTGCTGCTCGATGAGATGCAAATTCAA
CATCCAACAGCTTCCTTGATAGCAAAAGTAGCAACAGCTCAGGATGACGTCACAGGAGATGGTACTACTT
CAAATGTTCTAATTATTGGAGAGTTATTAAAACAAGCTGACCTGTACATTTCTGAGGGCCTGCACCCTAG
AATAATAGCTGAAGGATTTGAAGCTGCAAAGATAAAAGCACTTGAAGTTTTGGAGGAAGTTAAAGTGACA
AAGGAGATGAAAAGAAAAATCCTCTTAGATGTAGCTAGAACATCATTACAAACTAAAGTTCATGCTGAAC
TGGCTGATGTCTTAACAGAGGTTGTGGTGGATTCTGTTTTGGCTGTTAGAAGACCAGGTTACCCTATTGA
TCTCTTCATGGTAGAAATAATGGAGATGAAGCATAAATTAGGAACAGATACAAAAGAGGTGAACTCTGGT
TTCTTTTATAAGACTGCAGAAGAGAAAGAGAAATTGGTAAAAGCTGAAAGAAAATTTATTGAAGATAGAG
TACAAAAAATAATAGACCTGAAGGACAAAGTCTGTGCTCAGTCAAATAAAGGATTTGTCGTCATTAATCA
AAAGGGAATTGATCCATTTTCCTTAGATTCTCTTGCAAAACATGGAATAGTAGCTCTTCGCAGAGCAAAA
AGAAGAAATATGGAAAGACTCTCTCTTGCTTGTGGTGGAATGGCCGTGAATTCTTTTGAAGATCTCACTG
TAGATTGCTTGGGACATGCTGGTCTTGTGTATGAGTATACATTAGGTGAAGAAAAGTTCACTTTTATTGA
GGAGTGTGTTAACCCTTGCTCTGTTACCTTGTTGGTTAAAGGACCAAATAAGCATACTCTCACACAAGTC
AAGGATGCCATAAGAGATGGACTTCGTGCTATCAAAAATGCCATTGAAGATGGTTGTATGGTTCCTGGAG
CTGGTGCAATTGAAGTGGCAATGGCTGAAGCTCTTGTTACATATAAGAACAGTATAAAAGGAAGAGCTCG
TCTTGGAGTCCAAGCTTTTGCTGATGCCTTACTCATTATTCCCAAGGTTCTTGCTCAGAATGCTGGTTAT
GACCCACAGGAAACATTAGTAAAAGTTCAGGCTGAGCATGTCGAGTCAAAACAACTTGTGGGCGTAGATT
TGAATACAGGTGAGCCAATGGTAGCAGCAGATGCAGGAGTTTGGGATAATTATTGTGTAAAAAAACAACT
TCTTCACTCTTGCACAGTGATTGCCACCAACATTCTCCTGGTTGATGAAATTATGCGAGCTGGGATGTCT
TCTCTCAAATGA

Translation (493 aa):
MAAIKAVNSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQ
HPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVT
KEMKRKILLDVARTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTKEVNSG
FFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAK
RRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQV
KDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGY
DPQETLVKVQAEHVESKQLVGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMS
SLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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