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Report for CCDS54095.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54095.1 |
Public |
Homo sapiens |
17 |
NCOR1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:9611](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54095.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:9611](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 54095.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000395851.5 |
ENSP00000379192.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000395851.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379192.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000395851](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379192](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001190440.1 |
NP_001177369.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001190440.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001177369.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001190440](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001177369](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001177369.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001177369.1 |
2337 |
O75376-2 |
2337 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 54095.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (7014 nt): ATGTCAAGTTCAGGTTATCCTCCCAACCAAGGAGCATTCAGCACAGAACAAAGTCGTTATCCTCCTCACT CTGTCCAGTATACATTTCCCAACACCCGCCACCAGCAGGAGTTCGCAGTCCCTGATTATCGTTCCTCTCA TCTTGAAGTGAGTCAGGCATCACAGCTTTTGCAGCAACAGCAGCAGCAACAGCTTCGAAGGCGACCTTCC TTGCTTTCAGAATTTCACCCAGGTTCTGACAGGCCTCAAGAAAGGAGAACTAGTTATGAACCGTTTCATC CAGGCCCATCCCCAGTGGATCATGATTCACTGGAATCGAAGCGACCACGTCTGGAACAGGTTTCTGATTC TCATTTTCAGCGTGTCAGTGCTGCGGTTTTGCCTTTAGTGCACCCGCTGCCAGAAGGGCTGAGGGCTTCT GCAGATGCTAAGAAGGATCCAGCATTCGGAGGCAAACATGAAGCTCCATCCTCTCCAATTTCGGGGCAAC CATGTGGAGATGATCAAAATGCTTCACCTTCAAAACTCTCAAAGGAAGAGTTAATACAGAGTATGGATCG TGTAGATCGAGAAATTGCAAAAGTAGAACAGCAGATCCTTAAACTGAAAAAGAAACAACAACAGCTTGAA GAAGAGGCAGCTAAACCTCCTGAGCCTGAGAAGCCCGTGTCCCCTCCTCCTGTGGAGCAGAAACACCGCA GTATTGTCCAAATTATTTATGATGAGAATCGGAAAAAAGCAGAAGAAGCTCATAAAATTTTTGAAGGTCT TGGCCCAAAAGTTGAACTGCCACTGTATAACCAGCCATCAGATACCAAGGTGTACCATGAGAACATCAAG ACAAACCAGGTGATGAGGAAAAAACTCATTTTATTTTTTAAAAGAAGAAATCATGCAAGAAAACAAAGGG AACAAAAAATCTGCCAGCGTTATGATCAGCTCATGGAGGCATGGGAGAAAAAAGTGGACAGAATAGAAAA TAATCCTCGGAGGAAAGCTAAAGAAAGCAAAACAAGGGAATACTATGAAAAGCAGTTTCCAGAAATTCGA AAACAAAGAGAACAGCAAGAAAGATTTCAGCGAGTTGGGCAGAGGGGAGCTGGTCTTTCAGCCACCATTG CTAGGAGTGAGCATGAGATTTCTGAAATTATTGATGGGCTCTCTGAGCAGGAGAATAATGAGAAACAAAT GCGGCAGCTCTCTGTGATTCCACCTATGATGTTTGATGCAGAACAAAGACGAGTCAAGTTCATTAACATG AATGGGCTTATGGAGGACCCTATGAAAGTGTATAAAGATAGGCAGTTTATGAATGTTTGGACTGACCATG AAAAGGAGATCTTTAAGGACAAGTTTATCCAGCATCCAAAAAACTTTGGACTAATTGCATCATACTTGGA GAGGAAGAGTGTTCCTGATTGTGTTTTGTATTACTATTTAACCAAGAAAAATGAGAATTATAAAGCCCTC GTCAGAAGGAATTATGGGAAACGCAGAGGCAGAAACCAGCAAATTGCTCGACCCTCGCAAGAAGAAAAAG TAGAAGAAAAAGAAGAGGATAAAGCAGAAAAAACAGAAAAAAAAGAAGAAGAAAAGAAAGATGAAGAGGA AAAAGATGAAAAAGAAGACTCCAAAGAAAATACCAAGGAAAAGGACAAGATAGATGGTACAGCAGAAGAA ACTGAGGAAAGAGAGCAAGCCACACCCCGGGGGCGAAAGACTGCCAACAGTCAGGGCCGCCGTAAGGGCC GGATCACCAGGTCCATGACAAACGAAGCTGCAGCTGCCAGTGCTGCAGCCGCAGCGGCTACTGAAGAGCC CCCACCACCTCTGCCACCGCCACCAGAACCCATTTCTACAGAGCCTGTGGAGACCTCTCGATGGACAGAA GAAGAAATGGAAGTTGCTAAAAAAGGTCTAGTAGAACATGGTCGTAACTGGGCAGCAATTGCTAAAATGG TGGGAACGAAAAGTGAAGCTCAATGTAAAAACTTCTATTTTAACTATAAAAGGCGACACAATCTTGACAA CCTCTTACAGCAGCATAAACAGAAAACTTCACGAAAACCTCGTGAAGAGCGAGATGTGTCTCAATGTGAA AGTGTCGCTTCCACTGTTTCTGCTCAGGAGGATGAAGATATTGAAGCCTCCAATGAAGAAGAAAATCCAG AAGACAGCGAAGGTGCAGAAAATAGTTCTGATACAGAAAGTGCTCCTTCTCCTTCACCAGTTGAAGCTGT CAAGCCCAGCGAGGACAGTCCTGAAAATGCTACTTCTCGAGGAAACACAGAACCTGCGGTTGAGCTTGAG CCCACCACGGAAACTGCACCCAGTACATCTCCCTCCTTAGCAGTTCCAAGTACAAAACCAGCTGAAGATG AAAGTGTGGAGACCCAGGTGAATGACAGCATCAGTGCTGAGACAGCAGAGCAGATGGATGTAGATCAGCA GGAGCACAGTGCTGAAGAGGGTTCTGTTTGTGATCCCCCACCCGCTACCAAAGCTGACTCTGTGGACGTT GAAGTGAGGGTGCCAGAAAACCATGCATCTAAAGTTGAAGGTGATAATACCAAAGAAAGAGACTTGGATA GAGCCAGTGAGAAGGTGGAACCTAGAGATGAAGATTTGGTGGTAGCTCAGCAAATAAATGCCCAAAGGCC CGAGCCCCAGTCAGACAATGATTCCAGTGCCACGTGCAGCGCTGATGAGGATGTGGATGGAGAGCCAGAG AGGCAGAGAATGTTTCCTATGGACTCAAAGCCTTCACTGTTAAACCCCACTGGATCTATACTCGTCTCAT CTCCGTTAAAACCAAATCCACTGGATCTGCCACAGCTTCAGCATCGAGCTGCTGTTATCCCACCAATGGT ATCCTGCACCCCATGTAACATACCAATTGGAACCCCAGTGAGCGGCTATGCTCTCTACCAGCGACACATT AAAGCAATGCATGAGTCAGCACTCCTGGAGGAGCAGCGGCAGAGACAAGAACAGATAGATTTGGAATGTA GAAGTTCTACAAGTCCATGTGGCACATCCAAGAGTCCAAACAGAGAGTGGGAAGTCCTTCAGCCTGCTCC ACATCAAGTGATAACTAATCTCCCTGAAGGCGTTCGGCTTCCGACAACTCGACCAACCAGGCCACCGCCC CCTCTCATCCCGTCATCCAAAACCACAGTGGCTTCAGAAAAACCATCTTTTATAATGGGAGGCTCCATCT CACAGGGAACACCAGGCACTTATTTGACTTCTCATAATCAGGCTTCCTACACTCAAGAAACACCCAAGCC GTCAGTGGGATCTATCTCTCTTGGACTGCCACGGCAACAGGAATCTGCCAAATCAGCTACTTTGCCCTAC ATCAAGCAGGAAGAATTTTCTCCCCGAAGCCAAAACTCACAACCTGAGGGTCTGTTGGTCAGGGCCCAAC ATGAAGGTGTAGTCAGAGGTACCGCAGGAGCCATACAAGAAGGAAGTATAACTCGGGGAACTCCAACCAG CAAAATTTCAGTGGAGAGCATTCCATCCCTACGGGGCTCTATCACTCAGGGCACCCCGGCTCTGCCCCAG ACTGGCATACCAACAGAGGCTTTGGTGAAGGGGTCCATTTCGAGAATGCCCATTGAAGACAGCAGTCCTG AGAAAGGCAGAGAGGAAGCTGCATCCAAAGGCCATGTTATTTATGAAGGCAAAAGTGGACATATCTTGTC ATATGATAATATTAAGAATGCCCGAGAAGGGACTAGGAGTCCAAGAACAGCTCATGAAATCAGTTTAAAG AGAAGCTATGAATCAGTGGAAGGAAATATAAAGCAAGGGATGTCAATGAGGGAGTCTCCTGTATCAGCAC CGTTAGAGGGGCTGATATGCCGAGCATTACCCAGGGGGAGTCCTCATTCTGACCTCAAAGAAAGGACTGT ATTGTCTGGCTCCATAATGCAGGGGACACCAAGAGCAACAACTGAAAGCTTTGAAGATGGCCTTAAATAT CCCAAACAAATTAAAAGGGAAAGTCCTCCCATACGAGCATTTGAAGGTGCCATTACCAAAGGAAAACCAT ATGATGGCATCACCACCATCAAAGAAATGGGGCGTTCCATTCATGAGATTCCAAGGCAAGATATTTTAAC TCAGGAAAGTCGGAAAACTCCAGAAGTGGTCCAGAGCACACGGCCGATAATTGAGGGTTCCATTTCCCAG GGCACACCAATAAAGTTTGACAACAACTCAGGTCAATCTGCCATCAAACACAATGTCAAATCCTTAATCA CGGGGCCTAGCAAACTATCCCGTGGAATGCCTCCGCTGGAAATTGTGCCAGAGAACATAAAAGTGGTAGA ACGGGGAAAATATGAGGATGTGAAAGCAGGCGAGACCGTGCGTTCCCGGCACACGTCAGTGGTAAGCTCT GGCCCCTCCGTTCTTAGGTCCACACTGCATGAAGCTCCCAAAGCACAACTGAGCCCTGGGATTTATGATG ACACCAGTGCACGGAGGACCCCTGTGAGTTATCAAAACACCATGTCCAGAGGCTCACCCATGATGAACAG AACTTCTGATGTTACAATTTCTTCTAACAAGTCTACCAATCATGAAAGGAAATCGACACTGACCCCTACC CAGAGGGAAAGTATCCCAGCGAAGTCTCCAGTGCCTGGGGTGGACCCTGTCGTGAGCCACAGTCCGTTTG ATCCCCATCACAGAGGCAGCACTGCAGGCGAGGTTTATCGGAGCCACCTGCCCACGCACTTGGATCCAGC CATGCCTTTTCACAGGGCTTTGGATCCTGCAGCGGCTGCTTACCTGTTTCAGAGACAGCTTTCACCAACT CCAGGTTACCCAAGTCAGTATCAGCTTTACGCAATGGAGAACACAAGACAGACAATCTTAAATGATTACA TTACCTCACAACAGATGCAAGTGAACTTGCGTCCAGATGTGGCCAGAGGACTCTCCCCAAGAGAGCAGCC ACTGGGTCTCCCATACCCAGCAACGAGAGGAATCATTGACCTGACCAATATGCCTCCAACAATTTTAGTG CCTCATCCAGGGGGAACAAGCACTCCTCCCATGGACAGAATCACTTATATTCCTGGTACACAGATTACTT TCCCTCCCAGGCCGTACAACTCTGCTTCCATGTCTCCAGGACACCCAACACACCTTGCAGCTGCTGCAAG TGCTGAGAGGGAACGGGAACGGGAGCGGGAGAAGGAGCGGGAGCGGGAACGGATTGCTGCAGCTTCCTCC GACCTCTACCTGCGGCCAGGCTCAGAACAGCCTGGCCGACCTGGCAGTCATGGATATGTTCGCTCCCCTT CCCCTTCAGTAAGAACTCAGGAGACCATGTTGCAACAGAGACCCAGTGTTTTCCAAGGAACCAATGGAAC CAGTGTAATCACACCTTTGGATCCAACTGCTCAGCTACGAATCATGCCACTGCCTGCTGGGGGCCCTTCA ATAAGCCAAGGCCTGCCAGCCTCCCGTTACAACACTGCTGCGGATGCCCTGGCTGCTCTTGTGGATGCTG CAGCTTCTGCACCCCAGATGGATGTGTCCAAAACAAAAGAGATATCTTCTCACAGGTATGAAACACCTAG CGATGCTATTGAGGTGATAAGTCCTGCCAGCTCACCTGCGCCACCCCAGGAGAAACTGCAGACCTATCAG CCAGAGGTTGTTAAGGCAAATCAAGCGGAAAATGATCCTACCAGACAATATGAAGGACCATTACATCACT ATCGACCACAGCAGGAATCACCATCTCCCCAACAACAGCTGCCCCCTTCTTCACAGGCAGAGGGAATGGG GCAAGTGCCCAGGACCCATCGGCTGATCACACTTGCTGATCACATCTGTCAAATTATCACACAAGATTTT GCTAGAAATCAAGTTTCCTCGCAGACTCCCCAGCAGCCTCCTACTTCTACATTCCAGAACTCACCTTCTG CTTTGGTATCTACACCTGTGAGGACTAAAACATCAAACCGTTACAGCCCAGAATCCCAGGCTCAGTCTGT CCATCATCAAAGACCAGGTTCAAGGGTCTCTCCAGAAAATCTTGTGGACAAATCCAGGGGAAGTAGGCCT GGAAAATCCCCAGAGAGGAGTCACGTCTCTTCGGAGCCCTACGAGCCCATCTCCCCACCCCAGGTTCCGG TTGTGCATGAGAAACAGGACAGCTTGCTGCTCTTGTCTCAGAGGGGCGCAGAGCCTGCAGAGCAGAGGAA TGATGCCCGCTCACCAGGGAGTATAAGCTACTTGCCTTCATTCTTCACCAAGCTTGAAAATACATCACCC ATGGTTAAATCAAAGAAGCAGGAGATTTTTCGTAAGTTGAACTCCTCTGGTGGAGGTGACTCTGATATGG CAGCTGCTCAGCCAGGAACTGAGATCTTTAATCTGCCAGCAGTTACTACGTCAGGCTCAGTTAGCTCTAG AGGCCATTCTTTTGCTGATCCTGCCAGTAATCTTGGGCTGGAAGACATTATCAGGAAGGCTCTCATGGGA AGCTTTGATGACAAAGTTGAGGATCATGGAGTTGTCATGTCCCAGCCTATGGGAGTAGTGCCTGGTACTG CCAACACCTCAGTTGTGACCAGTGGTGAGACACGAAGAGAGGAAGGGGACCCATCACCTCATTCAGGAGG AGTTTGCAAACCAAAGCTGATCAGCAAGTCAAACAGCAGGAAATCTAAGTCTCCTATACCTGGGCAAGGC TACTTAGGAACGGAACGGCCCTCTTCAGTCTCCTCTGTACATTCAGAAGGGGATTACCATAGGCAGACGC CAGGGTGGGCCTGGGAAGACAGGCCCTCTTCAACAGGCTCAACTCAGTTTCCTTATAACCCTCTGACTAT GCGGATGCTCAGCAGTACTCCACCAACACCGATTGCATGTGCTCCCTCTGCGGTGAACCAAGCAGCTCCT CACCAACAGAACAGGATCTGGGAGCGAGAGCCTGCCCCACTGCTCTCAGCACAGTACGAGACCCTGTCGG ATAGTGATGACTGA
Translation (2337 aa): MSSSGYPPNQGAFSTEQSRYPPHSVQYTFPNTRHQQEFAVPDYRSSHLEVSQASQLLQQQQQQQLRRRPS LLSEFHPGSDRPQERRTSYEPFHPGPSPVDHDSLESKRPRLEQVSDSHFQRVSAAVLPLVHPLPEGLRAS ADAKKDPAFGGKHEAPSSPISGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQLE EEAAKPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHENIK TNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENNPRRKAKESKTREYYEKQFPEIR KQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMFDAEQRRVKFINM NGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKAL VRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEE TEEREQATPRGRKTANSQGRRKGRITRSMTNEAAAASAAAAAATEEPPPPLPPPPEPISTEPVETSRWTE EEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTSRKPREERDVSQCE SVASTVSAQEDEDIEASNEEENPEDSEGAENSSDTESAPSPSPVEAVKPSEDSPENATSRGNTEPAVELE PTTETAPSTSPSLAVPSTKPAEDESVETQVNDSISAETAEQMDVDQQEHSAEEGSVCDPPPATKADSVDV EVRVPENHASKVEGDNTKERDLDRASEKVEPRDEDLVVAQQINAQRPEPQSDNDSSATCSADEDVDGEPE RQRMFPMDSKPSLLNPTGSILVSSPLKPNPLDLPQLQHRAAVIPPMVSCTPCNIPIGTPVSGYALYQRHI KAMHESALLEEQRQRQEQIDLECRSSTSPCGTSKSPNREWEVLQPAPHQVITNLPEGVRLPTTRPTRPPP PLIPSSKTTVASEKPSFIMGGSISQGTPGTYLTSHNQASYTQETPKPSVGSISLGLPRQQESAKSATLPY IKQEEFSPRSQNSQPEGLLVRAQHEGVVRGTAGAIQEGSITRGTPTSKISVESIPSLRGSITQGTPALPQ TGIPTEALVKGSISRMPIEDSSPEKGREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEISLK RSYESVEGNIKQGMSMRESPVSAPLEGLICRALPRGSPHSDLKERTVLSGSIMQGTPRATTESFEDGLKY PKQIKRESPPIRAFEGAITKGKPYDGITTIKEMGRSIHEIPRQDILTQESRKTPEVVQSTRPIIEGSISQ GTPIKFDNNSGQSAIKHNVKSLITGPSKLSRGMPPLEIVPENIKVVERGKYEDVKAGETVRSRHTSVVSS GPSVLRSTLHEAPKAQLSPGIYDDTSARRTPVSYQNTMSRGSPMMNRTSDVTISSNKSTNHERKSTLTPT QRESIPAKSPVPGVDPVVSHSPFDPHHRGSTAGEVYRSHLPTHLDPAMPFHRALDPAAAAYLFQRQLSPT PGYPSQYQLYAMENTRQTILNDYITSQQMQVNLRPDVARGLSPREQPLGLPYPATRGIIDLTNMPPTILV PHPGGTSTPPMDRITYIPGTQITFPPRPYNSASMSPGHPTHLAAAASAEREREREREKERERERIAAASS DLYLRPGSEQPGRPGSHGYVRSPSPSVRTQETMLQQRPSVFQGTNGTSVITPLDPTAQLRIMPLPAGGPS ISQGLPASRYNTAADALAALVDAAASAPQMDVSKTKEISSHRYETPSDAIEVISPASSPAPPQEKLQTYQ PEVVKANQAENDPTRQYEGPLHHYRPQQESPSPQQQLPPSSQAEGMGQVPRTHRLITLADHICQIITQDF ARNQVSSQTPQQPPTSTFQNSPSALVSTPVRTKTSNRYSPESQAQSVHHQRPGSRVSPENLVDKSRGSRP GKSPERSHVSSEPYEPISPPQVPVVHEKQDSLLLLSQRGAEPAEQRNDARSPGSISYLPSFFTKLENTSP MVKSKKQEIFRKLNSSGGGDSDMAAAQPGTEIFNLPAVTTSGSVSSRGHSFADPASNLGLEDIIRKALMG SFDDKVEDHGVVMSQPMGVVPGTANTSVVTSGETRREEGDPSPHSGGVCKPKLISKSNSRKSKSPIPGQG YLGTERPSSVSSVHSEGDYHRQTPGWAWEDRPSSTGSTQFPYNPLTMRMLSSTPPTPIACAPSAVNQAAP HQQNRIWEREPAPLLSAQYETLSDSDD
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