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Report for CCDS54072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54072.1 Public Homo sapiens 17 CAMTA2 24 110 108 CCDS HistoryNCBI Gene:23125Re-query CCDS DB by CCDS ID:54072.1Re-query CCDS DB by GeneID:23125See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000414043.7 ENSP00000412886.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000414043.7Link to Ensembl Protein Viewer:ENSP00000412886.3Re-query CCDS DB by Nucleotide ID:ENST00000414043Re-query CCDS DB by Protein ID:ENSP00000412886
Original member Current member NCBI NM_001171167.2 NP_001164638.1 Accepted alive Link to Nucleotide Sequence:NM_001171167.2Link to Protein Sequence:NP_001164638.1Re-query CCDS DB by Nucleotide ID:NM_001171167Re-query CCDS DB by Protein ID:NP_001164638Link to BLAST:NP_001164638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164638.1 1241 O94983-6 1241 100% 0 0

Chromosomal Locations for CCDS 54072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4968706 4968819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4968907 4968979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969150 4969337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969500 4969520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969630 4969701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969902 4970085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4970340 4970536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4972232 4972536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4972769 4972991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4973175 4973253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4973585 4973769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4974385 4974500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4977058 4977192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4978504 4978630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4979684 4980621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4981225 4981359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4981678 4981831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4982089 4982160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4982757 4982892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4982976 4983043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4985880 4985983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4986192 4986286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4986954 4986958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3726 nt):
ATGGGCACAGACTCCCCCTCCCCCCGGCCCCTCAGGCCGGGGGTGACCTTGCCCCCTGGAGCCCTCACCA
TGAATACCAAGGACACCACCGAGGTTGCTGAAAACAGCCACCACCTGAAGATCTTTCTCCCCAAGAAGCT
GCTGGAGTGTCTTCCTCGCTGCCCGCTGCTGCCTCCAGAGAGGCTACGGTGGAATACAAATGAGGAGATT
GCATCCTACCTGATCACCTTTGAGAAGCATGATGAGTGGCTGTCTTGTGCCCCAAAGACAAGGCCTCAGA
ATGGCTCCATCATCCTCTACAATCGCAAGAAGGTGAAATATCGGAAGGATGGTTACCTCTGGAAGAAGCG
GAAGGATGGGAAGACCACCCGAGAGGACCACATGAAGCTGAAGGTCCAGGGCATGGAGTGTCTCTATGGC
TGCTACGTTCACTCTTCCATCGTCCCCACATTCCATCGGCGCTGCTACTGGCTGCTCCAGAACCCTGACA
TCGTCCTTGTGCACTACCTGAACGTCCCAGCCCTGGAGGACTGTGGAAAGGGCTGCAGCCCCATCTTTTG
TTCCATCAGCAGCGACCGTCGAGAGTGGCTGAAGTGGTCCCGGGAGGAGTTGTTGGGACAGCTGAAGCCC
ATGTTTCATGGCATCAAGTGGAGCTGCGGGAATGGAACAGAAGAGTTCTCTGTAGAACACCTGGTGCAGC
AGATTTTGGACACCCACCCAACCAAGCCTGCTCCCCGAACCCACGCCTGTCTCTGCAGTGGGGGGCTTGG
TTCTGGGAGCCTTACCCACAAATGCAGCAGCACGAAACACCGCATCATCTCTCCCAAAGTGGAGCCCCGA
GCTTTAACCCTGACCTCTATCCCCCACGCTCACCCCCCAGAGCCTCCTCCACTGATAGCCCCACTTCCCC
CAGAGCTCCCCAAGGCACACACCTCCCCATCTTCTTCCTCTTCTTCCTCCTCATCAGGTTTTGCAGAGCC
CCTAGAAATCAGACCTAGCCCTCCCACTTCTCGAGGGGGTTCTTCAAGAGGAGGCACTGCTATCCTCCTC
CTGACAGGACTGGAGCAGCGGGCTGGAGGCTTGACGCCCACCAGGCACTTGGCTCCACAGGCTGATCCTA
GGCCTTCCATGAGTTTGGCAGTGGTTGTAGGCACTGAGCCTTCTGCCCCACCAGCTCCTCCCAGTCCTGC
CTTTGACCCTGATCGTTTTCTCAACAGCCCCCAGAGGGGCCAGACATATGGAGGGGGGCAGGGAGTAAGC
CCAGACTTCCCCGAGGCAGAGGCCGCTCATACCCCCTGTTCTGCCCTAGAGCCTGCTGCTGCCCTGGAGC
CCCAGGCAGCTGCTCGGGGTCCCCCACCACAGTCAGTAGCAGGTGGGAGAAGAGGAAACTGCTTCTTCAT
CCAAGATGATGACAGTGGGGAGGAGCTCAAGGGTCACGGGGCTGCCCCACCCATACCTTCACCCCCTCCC
TCACCCCCACCCTCACCTGCCCCCTTGGAGCCGTCAAGCAGGGTAGGAAGAGGAGAGGCCTTGTTTGGAG
GACCTGTTGGGGCCAGTGAACTGGAGCCCTTCAGTCTTTCATCATTCCCAGACCTTATGGGAGAACTCAT
CAGTGACGAAGCTCCAAGCATCCCTGCTCCGACCCCCCAGCTGTCTCCTGCTCTTAGCACCATCACAGAC
TTCTCCCCAGAGTGGTCCTACCCAGAGGGTGGGGTCAAGGTGCTCATCACAGGTCCTTGGACCGAAGCCG
CCGAGCATTACTCCTGTGTCTTTGATCACATCGCAGTGCCAGCCTCACTTGTCCAGCCTGGTGTCTTACG
CTGCTACTGTCCCGCCCATGAGGTAGGGCTGGTGTCTTTGCAGGTGGCAGGGCGGGAGGGGCCCCTTTCT
GCTTCTGTGCTCTTTGAGTATCGAGCCCGCCGATTCCTGTCTCTGCCTAGTACTCAACTTGACTGGCTGT
CACTGGACGACAACCAGTTCCGGATGTCCATACTAGAGCGACTGGAGCAGATGGAGAAGCGGATGGCAGA
GATCGCAGCAGCTGGGCAGGTGCCTTGCCAGGGTCCTGATGCTCCTCCAGTTCAGGATGAAGGCCAGGGG
CCTGGGTTCGAAGCACGGGTAGTGGTCTTGGTAGAAAGCATGATCCCACGCTCCACCTGGAAGGGTCCTG
AACGTCTGGCCCATGGAAGCCCCTTCCGGGGCATGAGCCTTCTGCACCTGGCTGCTGCCCAGGGCTATGC
CCGCCTCATCGAGACCCTGAGCCAGTGGCGGAGTGTGGAGACTGGAAGCTTGGACTTAGAGCAGGAGGTT
GACCCGCTCAACGTGGATCATTTCTCTTGCACCCCTCTGATGTGGGCTTGTGCCCTGGGACACCTGGAAG
CTGCTGTGCTCCTTTTCCGTTGGAACCGACAGGCACTGAGCATTCCCGACTCTCTGGGCCGTCTGCCATT
GTCTGTGGCTCATTCCCGGGGTCATGTGCGCCTTGCCCGCTGCCTTGAGGAACTACAGAGACAGGAGCCT
TCGGTGGAGCCCCCATTTGCCCTATCGCCACCCTCCTCCAGCCCAGACACTGGTCTGAGCAGCGTCTCCT
CGCCCTCGGAGCTGTCGGATGGCACCTTTTCCGTCACGTCAGCCTATTCTAGTGCCCCAGATGGCAGTCC
CCCCCCTGCACCTCTGCCAGCCTCTGAGATGACTATGGAGGACATGGCCCCAGGCCAGCTTTCCTCTGGT
GTCCCAGAAGCCCCCCTACTCCTCATGGACTATGAGGCTACCAACTCCAAGGGGCCCCTCTCCTCCCTTC
CTGCCCTCCCACCAGCTTCAGATGATGGGGCTGCTCCAGAGGACGCTGACAGCCCACAGGCTGTGGATGT
GATCCCGGTGGACATGATCTCACTAGCCAAGCAGATCATCGAAGCCACACCGGAGCGGATTAAACGAGAG
GACTTCGTGGGGCTGCCCGAGGCTGGAGCCTCAATGCGGGAGCGGACAGGGGCTGTGGGGCTCAGTGAGA
CCATGTCCTGGCTGGCCAGCTACCTGGAGAATGTGGACCATTTCCCCAGCTCAACCCCTCCCAGCGAACT
GCCCTTTGAGCGAGGTCGCCTGGCTGTCCCTTCAGCACCCTCCTGGGCAGAGTTTCTCTCTGCATCCACC
AGTGGCAAGATGGAAAGTGATTTTGCCCTGCTGACACTATCAGATCACGAGCAGCGGGAACTGTATGAGG
CTGCCCGAGTCATCCAGACGGCCTTCCGAAAGTACAAGGGCCGGCGGCTGAAGGAGCAGCAGGAGGTAGC
AGCAGCTGTAATCCAGCGCTGTTACCGGAAGTACAAGCAGCTGACCTGGATTGCACTTAAGTTTGCACTC
TATAAGAAGATGACCCAGGCGGCCATCCTGATCCAGAGCAAGTTCCGAAGCTACTATGAACAGAAGCGAT
TTCAGCAGAGCCGCCGAGCGGCTGTGCTCATCCAGCAGCACTACCGCTCCTACCGCCGCAGGCCCGGCCC
TCCCCACCGGACTTCGGCCACCCTGCCTGCCCGCAACAAGCTCCTTTCTCACCAAGAAGCAGGACCAGGC
AGCCCGGAAGATCATGAGATTCCTGCGGCGCTGCCGACACAGGATGAGGGAACTGAAGCAGAACCAGGAG
CTGGAAGGGCTTCCCCAGCCGGGACTGGCCACATGACCTGGCCACCGCCTTTCTCACCACCCTGGGGGCG
CCTCGTGCAGTCTTAA

Translation (1241 aa):
MGTDSPSPRPLRPGVTLPPGALTMNTKDTTEVAENSHHLKIFLPKKLLECLPRCPLLPPERLRWNTNEEI
ASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVKYRKDGYLWKKRKDGKTTREDHMKLKVQGMECLYG
CYVHSSIVPTFHRRCYWLLQNPDIVLVHYLNVPALEDCGKGCSPIFCSISSDRREWLKWSREELLGQLKP
MFHGIKWSCGNGTEEFSVEHLVQQILDTHPTKPAPRTHACLCSGGLGSGSLTHKCSSTKHRIISPKVEPR
ALTLTSIPHAHPPEPPPLIAPLPPELPKAHTSPSSSSSSSSSGFAEPLEIRPSPPTSRGGSSRGGTAILL
LTGLEQRAGGLTPTRHLAPQADPRPSMSLAVVVGTEPSAPPAPPSPAFDPDRFLNSPQRGQTYGGGQGVS
PDFPEAEAAHTPCSALEPAAALEPQAAARGPPPQSVAGGRRGNCFFIQDDDSGEELKGHGAAPPIPSPPP
SPPPSPAPLEPSSRVGRGEALFGGPVGASELEPFSLSSFPDLMGELISDEAPSIPAPTPQLSPALSTITD
FSPEWSYPEGGVKVLITGPWTEAAEHYSCVFDHIAVPASLVQPGVLRCYCPAHEVGLVSLQVAGREGPLS
ASVLFEYRARRFLSLPSTQLDWLSLDDNQFRMSILERLEQMEKRMAEIAAAGQVPCQGPDAPPVQDEGQG
PGFEARVVVLVESMIPRSTWKGPERLAHGSPFRGMSLLHLAAAQGYARLIETLSQWRSVETGSLDLEQEV
DPLNVDHFSCTPLMWACALGHLEAAVLLFRWNRQALSIPDSLGRLPLSVAHSRGHVRLARCLEELQRQEP
SVEPPFALSPPSSSPDTGLSSVSSPSELSDGTFSVTSAYSSAPDGSPPPAPLPASEMTMEDMAPGQLSSG
VPEAPLLLMDYEATNSKGPLSSLPALPPASDDGAAPEDADSPQAVDVIPVDMISLAKQIIEATPERIKRE
DFVGLPEAGASMRERTGAVGLSETMSWLASYLENVDHFPSSTPPSELPFERGRLAVPSAPSWAEFLSAST
SGKMESDFALLTLSDHEQRELYEAARVIQTAFRKYKGRRLKEQQEVAAAVIQRCYRKYKQLTWIALKFAL
YKKMTQAAILIQSKFRSYYEQKRFQQSRRAAVLIQQHYRSYRRRPGPPHRTSATLPARNKLLSHQEAGPG
SPEDHEIPAALPTQDEGTEAEPGAGRASPAGTGHMTWPPPFSPPWGRLVQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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