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Report for CCDS54071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54071.1 Public Homo sapiens 17 CAMTA2 24 110 108 CCDS HistoryNCBI Gene:23125Re-query CCDS DB by CCDS ID:54071.1Re-query CCDS DB by GeneID:23125See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361571.9 ENSP00000354828.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361571.9Link to Ensembl Protein Viewer:ENSP00000354828.5Re-query CCDS DB by Nucleotide ID:ENST00000361571Re-query CCDS DB by Protein ID:ENSP00000354828
Original member Current member NCBI NM_001171168.2 NP_001164639.1 Accepted alive Link to Nucleotide Sequence:NM_001171168.2Link to Protein Sequence:NP_001164639.1Re-query CCDS DB by Nucleotide ID:NM_001171168Re-query CCDS DB by Protein ID:NP_001164639Link to BLAST:NP_001164639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164639.1 1201 O94983-4 1201 100% 0 0

Chromosomal Locations for CCDS 54071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4968756 4968819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4968907 4968981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969150 4969337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969500 4969520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969630 4969701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4969902 4970085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4970340 4970536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4972232 4972536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4972769 4972991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4973175 4973253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4973585 4973769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4974385 4974500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4977058 4977192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4978504 4978630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4979684 4980621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4981225 4981359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4981678 4981831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4982757 4982892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4982976 4983043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4985880 4985983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4986192 4986286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4986954 4986958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3606 nt):
ATGGGCACAGACTCCCCCTCCCCCCGGCCCCTCAGGCCGGGGGTGACCTTGCCCCCTGGAGCCCTCACCA
TGAATACCAAGGACACCACCGAGGTTGCTGAAAACAGCCACCACCTGAAGATCTTTCTCCCCAAGAAGCT
GCTGGAGTGTCTTCCTCGCTGCCCGCTGCTGCCTCCAGAGAGGCTACGGTGGAATACAAATGAGGAGATT
GCATCCTACCTGATCACCTTTGAGAAGCATGATGAGTGGCTGTCTTGTGCCCCAAAGACAAGGCCTCAGA
ATGGCTCCATCATCCTCTACAATCGCAAGAAGGTGAAATATCGGAAGGATGGTTACCTCTGGAAGAAGCG
GAAGGATGGGAAGACCACCCGAGAGGACCACATGAAGCTGAAGGTCCAGGGCATGGAGAACCCTGACATC
GTCCTTGTGCACTACCTGAACGTCCCAGCCCTGGAGGACTGTGGAAAGGGCTGCAGCCCCATCTTTTGTT
CCATCAGCAGCGACCGTCGAGAGTGGCTGAAGTGGTCCCGGGAGGAGTTGTTGGGACAGCTGAAGCCCAT
GTTTCATGGCATCAAGTGGAGCTGCGGGAATGGAACAGAAGAGTTCTCTGTAGAACACCTGGTGCAGCAG
ATTTTGGACACCCACCCAACCAAGCCTGCTCCCCGAACCCACGCCTGTCTCTGCAGTGGGGGGCTTGGTT
CTGGGAGCCTTACCCACAAATGCAGCAGCACGAAACACCGCATCATCTCTCCCAAAGTGGAGCCCCGAGC
TTTAACCCTGACCTCTATCCCCCACGCTCACCCCCCAGAGCCTCCTCCACTGATAGCCCCACTTCCCCCA
GAGCTCCCCAAGGCACACACCTCCCCATCTTCTTCCTCTTCTTCCTCCTCATCAGGTTTTGCAGAGCCCC
TAGAAATCAGACCTAGCCCTCCCACTTCTCGAGGGGGTTCTTCAAGAGGAGGCACTGCTATCCTCCTCCT
GACAGGACTGGAGCAGCGGGCTGGAGGCTTGACGCCCACCAGGCACTTGGCTCCACAGGCTGATCCTAGG
CCTTCCATGAGTTTGGCAGTGGTTGTAGGCACTGAGCCTTCTGCCCCACCAGCTCCTCCCAGTCCTGCCT
TTGACCCTGATCGTTTTCTCAACAGCCCCCAGAGGGGCCAGACATATGGAGGGGGGCAGGGAGTAAGCCC
AGACTTCCCCGAGGCAGAGGCCGCTCATACCCCCTGTTCTGCCCTAGAGCCTGCTGCTGCCCTGGAGCCC
CAGGCAGCTGCTCGGGGTCCCCCACCACAGTCAGTAGCAGGTGGGAGAAGAGGAAACTGCTTCTTCATCC
AAGATGATGACAGTGGGGAGGAGCTCAAGGGTCACGGGGCTGCCCCACCCATACCTTCACCCCCTCCCTC
ACCCCCACCCTCACCTGCCCCCTTGGAGCCGTCAAGCAGGGTAGGAAGAGGAGAGGCCTTGTTTGGAGGA
CCTGTTGGGGCCAGTGAACTGGAGCCCTTCAGTCTTTCATCATTCCCAGACCTTATGGGAGAACTCATCA
GTGACGAAGCTCCAAGCATCCCTGCTCCGACCCCCCAGCTGTCTCCTGCTCTTAGCACCATCACAGACTT
CTCCCCAGAGTGGTCCTACCCAGAGGGTGGGGTCAAGGTGCTCATCACAGGTCCTTGGACCGAAGCCGCC
GAGCATTACTCCTGTGTCTTTGATCACATCGCAGTGCCAGCCTCACTTGTCCAGCCTGGTGTCTTACGCT
GCTACTGTCCCGCCCATGAGGTAGGGCTGGTGTCTTTGCAGGTGGCAGGGCGGGAGGGGCCCCTTTCTGC
TTCTGTGCTCTTTGAGTATCGAGCCCGCCGATTCCTGTCTCTGCCTAGTACTCAACTTGACTGGCTGTCA
CTGGACGACAACCAGTTCCGGATGTCCATACTAGAGCGACTGGAGCAGATGGAGAAGCGGATGGCAGAGA
TCGCAGCAGCTGGGCAGGTGCCTTGCCAGGGTCCTGATGCTCCTCCAGTTCAGGATGAAGGCCAGGGGCC
TGGGTTCGAAGCACGGGTAGTGGTCTTGGTAGAAAGCATGATCCCACGCTCCACCTGGAAGGGTCCTGAA
CGTCTGGCCCATGGAAGCCCCTTCCGGGGCATGAGCCTTCTGCACCTGGCTGCTGCCCAGGGCTATGCCC
GCCTCATCGAGACCCTGAGCCAGTGGCGGAGTGTGGAGACTGGAAGCTTGGACTTAGAGCAGGAGGTTGA
CCCGCTCAACGTGGATCATTTCTCTTGCACCCCTCTGATGTGGGCTTGTGCCCTGGGACACCTGGAAGCT
GCTGTGCTCCTTTTCCGTTGGAACCGACAGGCACTGAGCATTCCCGACTCTCTGGGCCGTCTGCCATTGT
CTGTGGCTCATTCCCGGGGTCATGTGCGCCTTGCCCGCTGCCTTGAGGAACTACAGAGACAGGAGCCTTC
GGTGGAGCCCCCATTTGCCCTATCGCCACCCTCCTCCAGCCCAGACACTGGTCTGAGCAGCGTCTCCTCG
CCCTCGGAGCTGTCGGATGGCACCTTTTCCGTCACGTCAGCCTATTCTAGTGCCCCAGATGGCAGTCCCC
CCCCTGCACCTCTGCCAGCCTCTGAGATGACTATGGAGGACATGGCCCCAGGCCAGCTTTCCTCTGGTGT
CCCAGAAGCCCCCCTACTCCTCATGGACTATGAGGCTACCAACTCCAAGGGGCCCCTCTCCTCCCTTCCT
GCCCTCCCACCAGCTTCAGATGATGGGGCTGCTCCAGAGGACGCTGACAGCCCACAGGCTGTGGATGTGA
TCCCGGTGGACATGATCTCACTAGCCAAGCAGATCATCGAAGCCACACCGGAGCGGATTAAACGAGAGGA
CTTCGTGGGGCTGCCCGAGGCTGGAGCCTCAATGCGGGAGCGGACAGGGGCTGTGGGGCTCAGTGAGACC
ATGTCCTGGCTGGCCAGCTACCTGGAGAATGTGGACCATTTCCCCAGCTCAACCCCTCCCAGCGAACTGC
CCTTTGAGCGAGGTCGCCTGGCTGTCCCTTCAGCACCCTCCTGGGCAGAGTTTCTCTCTGCATCCACCAG
TGGCAAGATGGAAAGTGATTTTGCCCTGCTGACACTATCAGATCACGAGCAGCGGGAACTGTATGAGGCT
GCCCGAGTCATCCAGACGGCCTTCCGAAAGTACAAGGGCCGGCGGCTGAAGGAGCAGCAGGAGGTAGCAG
CAGCTGTAATCCAGCGCTGTTACCGGAAGTACAAGCAGCTGACCTGGATTGCACTTAAGTTTGCACTCTA
TAAGAAGATGACCCAGGCGGCCATCCTGATCCAGAGCAAGTTCCGAAGCTACTATGAACAGAAGCGATTT
CAGCAGAGCCGCCGAGCGGCTGTGCTCATCCAGCAGCACTACCGCTCCTACCGCCGCAGGCCCGGCCCTC
CCCACCGGACTTCGGCCACCCTGCCTGCCCGCAACAAAGGCTCCTTTCTCACCAAGAAGCAGGACCAGGC
AGCCCGGAAGATCATGAGATTCCTGCGGCGCTGCCGACACAGGATGAGGGAACTGAAGCAGAACCAGGAG
CTGGAAGGGCTTCCCCAGCCGGGACTGGCCACATGA

Translation (1201 aa):
MGTDSPSPRPLRPGVTLPPGALTMNTKDTTEVAENSHHLKIFLPKKLLECLPRCPLLPPERLRWNTNEEI
ASYLITFEKHDEWLSCAPKTRPQNGSIILYNRKKVKYRKDGYLWKKRKDGKTTREDHMKLKVQGMENPDI
VLVHYLNVPALEDCGKGCSPIFCSISSDRREWLKWSREELLGQLKPMFHGIKWSCGNGTEEFSVEHLVQQ
ILDTHPTKPAPRTHACLCSGGLGSGSLTHKCSSTKHRIISPKVEPRALTLTSIPHAHPPEPPPLIAPLPP
ELPKAHTSPSSSSSSSSSGFAEPLEIRPSPPTSRGGSSRGGTAILLLTGLEQRAGGLTPTRHLAPQADPR
PSMSLAVVVGTEPSAPPAPPSPAFDPDRFLNSPQRGQTYGGGQGVSPDFPEAEAAHTPCSALEPAAALEP
QAAARGPPPQSVAGGRRGNCFFIQDDDSGEELKGHGAAPPIPSPPPSPPPSPAPLEPSSRVGRGEALFGG
PVGASELEPFSLSSFPDLMGELISDEAPSIPAPTPQLSPALSTITDFSPEWSYPEGGVKVLITGPWTEAA
EHYSCVFDHIAVPASLVQPGVLRCYCPAHEVGLVSLQVAGREGPLSASVLFEYRARRFLSLPSTQLDWLS
LDDNQFRMSILERLEQMEKRMAEIAAAGQVPCQGPDAPPVQDEGQGPGFEARVVVLVESMIPRSTWKGPE
RLAHGSPFRGMSLLHLAAAQGYARLIETLSQWRSVETGSLDLEQEVDPLNVDHFSCTPLMWACALGHLEA
AVLLFRWNRQALSIPDSLGRLPLSVAHSRGHVRLARCLEELQRQEPSVEPPFALSPPSSSPDTGLSSVSS
PSELSDGTFSVTSAYSSAPDGSPPPAPLPASEMTMEDMAPGQLSSGVPEAPLLLMDYEATNSKGPLSSLP
ALPPASDDGAAPEDADSPQAVDVIPVDMISLAKQIIEATPERIKREDFVGLPEAGASMRERTGAVGLSET
MSWLASYLENVDHFPSSTPPSELPFERGRLAVPSAPSWAEFLSASTSGKMESDFALLTLSDHEQRELYEA
ARVIQTAFRKYKGRRLKEQQEVAAAVIQRCYRKYKQLTWIALKFALYKKMTQAAILIQSKFRSYYEQKRF
QQSRRAAVLIQQHYRSYRRRPGPPHRTSATLPARNKGSFLTKKQDQAARKIMRFLRRCRHRMRELKQNQE
LEGLPQPGLAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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