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Report for CCDS54059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54059.1 Public Homo sapiens 17 RPH3AL 24 110 108 CCDS HistoryNCBI Gene:9501Re-query CCDS DB by CCDS ID:54059.1Re-query CCDS DB by GeneID:9501See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323434.12 ENSP00000319210.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323434.12Link to Ensembl Protein Viewer:ENSP00000319210.8Re-query CCDS DB by Nucleotide ID:ENST00000323434Re-query CCDS DB by Protein ID:ENSP00000319210
Original member Current member EBI ENST00000536489.6 ENSP00000438224.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536489.6Link to Ensembl Protein Viewer:ENSP00000438224.2Re-query CCDS DB by Nucleotide ID:ENST00000536489Re-query CCDS DB by Protein ID:ENSP00000438224
Original member Current member NCBI NM_001190412.2 NP_001177341.1 Accepted alive Link to Nucleotide Sequence:NM_001190412.2Link to Protein Sequence:NP_001177341.1Re-query CCDS DB by Nucleotide ID:NM_001190412Re-query CCDS DB by Protein ID:NP_001177341Link to BLAST:NP_001177341.1
Original member Current member NCBI NM_001190413.2 NP_001177342.1 Accepted alive Link to Nucleotide Sequence:NM_001190413.2Link to Protein Sequence:NP_001177342.1Re-query CCDS DB by Nucleotide ID:NM_001190413Re-query CCDS DB by Protein ID:NP_001177342Link to BLAST:NP_001177342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177341.1 286 Q9UNE2-2 286 100% 0 0
NP_001177342.1 286 Q9UNE2-2 286 100% 0 0

Chromosomal Locations for CCDS 54059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 213852 213923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 215654 215802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 219623 219736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 247111 247285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 319420 319549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 321272 321415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 327467 327543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGCCGACACCATCTTCGGCAGCGGGAATGATCAGTGGGTTTGCCCCAATGACCGGCAGCTTGCCCTTC
GAGCCAAGCTGCAGACGGGCTGGTCCGTGCACACCTACCAGACGGAGAAGCAGAGGAGGAAGCAGCACCT
CAGCCCGGCGGAGGTGGAGGCCATCCTGCAGGTCATCCAGAGGGCAGAGCGGCTCGACGTCCTGGAGCAG
CAGAGAATCGGGCGGCTGGTGGAGCGGCTGGAGACCATGAGGCGGAATGTGATGGGGAACGGCCTGTCCC
AGTGTCTGCTCTGCGGGGAGGTGCTGGGCTTCCTGGGCAGCTCGTCGGTGTTCTGCAAAGACTGCAGGAA
GGTCTGGAAGAGGTCGGGGGCCTGGTTCTACAAAGGGCTCCCCAAGTATATCTTGCCCCTGAAGACCCCT
GGCCGAGCTGATGACCCCCACTTCCGACCTTTGCCCACGGAACCGGCAGAGCGAGAGCCCAGAAGCTCTG
AGACCAGCCGCATCTACACGTGGGCCCGAGGAAGAGTGGTTTCCAGTGACAGTGACAGTGACTCGGATCT
TAGCTCCTCCAGCCTAGAGGACAGACTCCCATCCACTGGGGTCAGGGACCGGAAAGGCGACAAACCCTGG
AAGGAGTCAGGTGGCAGCGTGGAGGCCCCCAGGATGGGGTTCACCCACCCGCCGGGCCACCTCTCTGGGT
GCCAGAGCAGCCTGGCCAGTGGTGAGACGGGGACAGGCTCTGCTGACCCGCCAGGGGGACCCCGCCCCGG
GCTGACCCGAAGGGCCCCGGTAAAAGACACACCTGGACGAGCCCCCGCTGCTGACGCAGCTCCAGCAGGC
CCCTCCAGCTGCCTGGGCTGA

Translation (286 aa):
MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQ
QRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKVWKRSGAWFYKGLPKYILPLKTP
GRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPW
KESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAG
PSSCLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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