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Report for CCDS53992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53992.1 Public Homo sapiens 16 TMC7 24 110 108 CCDS HistoryNCBI Gene:79905Re-query CCDS DB by CCDS ID:53992.1Re-query CCDS DB by GeneID:79905See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421369.3 ENSP00000397081.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421369.3Link to Ensembl Protein Viewer:ENSP00000397081.3Re-query CCDS DB by Nucleotide ID:ENST00000421369Re-query CCDS DB by Protein ID:ENSP00000397081
Original member Current member NCBI NM_001160364.2 NP_001153836.1 Accepted alive Link to Nucleotide Sequence:NM_001160364.2Link to Protein Sequence:NP_001153836.1Re-query CCDS DB by Nucleotide ID:NM_001160364Re-query CCDS DB by Protein ID:NP_001153836Link to BLAST:NP_001153836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153836.1 613 Q7Z402-2 613 100% 0 0

Chromosomal Locations for CCDS 53992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19016469 19016598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19021629 19021796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19023113 19023195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19030224 19030369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19035676 19035823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19037874 19038047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19040289 19040446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19044884 19045001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19045341 19045438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19047063 19047249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19051686 19051816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19056542 19056697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19059416 19059494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 19061778 19061843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGAAGTATCTCTCCGAATGGGACCAGTGGAAGCGGTATAGCAGCAAGTCTTGGAAGAGGTTCCTAGAGA
AGGCTCGAGAGATGACGACCCACCTGGAGCTGTGGCGGGAGGACATCCGCAGCATAGAAGGGAAATTTGG
CACTGGGATTCAGTCCTATTTCTCCTTCTTGAGATTCCTGGTGTTGCTGAATTTGGTGATATTTCTGATC
ATCTTTATGCTGGTTTTGCTCCCAGTCTTACTCACGAAATACAAGATCACCAACAGCAGCTTCGTGCTCA
TTCCTTTCAAAGACATGGATAAACAATGTACAGTCTATCCAGTAAGCAGTTCTGGACTCATTTACTTTTA
CAGTTATATCATAGACTTGCTTTCTGGCACTGGTTTCCTGGAGGAAACTAGCCTCTTTTACGGACATTAC
ACCATTGATGGGGTGAAATTTCAGAACTTCACCTATGATCTGCCCCTGGCGTATTTGTTAAGCACAATCG
CCTCCCTGGCCCTGAGCCTTCTTTGGATAGTGAAAAGGTCGGTGGAAGGATTCAAAATCAACCTGATTCG
GAGTGAGGAGCACTTTCAGAGTTACTGCAACAAGATATTTGCCGGCTGGGACTTCTGCATCACTAACCGC
AGCATGGCGGATCTGAAGCACAGCAGCTTGCGGTACGAGCTCCGAGCAGATCTGGAGGAAGAAAGAATGC
GGCAGAAAATAGCAGAAAGGACCTCAGAAGAAACAATACGCATTTACTCTTTGAGACTGTTTTTGAACTG
TATTGTTCTGGCTGTTTTAGGGGCATGCTTTTATGCAATATACGTAGCAACTGTCTTCTCGCAAGAGCAC
ATGAAAAAGGAAATCGACAAGATGGTTTTTGGAGAGAACCTCTTCATATTGTATCTACCGTCTATTGTGA
TCACGCTGGCCAATTTTATCACCCCAATGATCTTTGCCAAGATCATCCGCTATGAGGATTATTCTCCAGG
CTTTGAGATCCGTCTGACAATCCTTAGGTGTGTCTTTATGCGGCTGGCCACCATATGTGTCCTGGTGTTC
ACGCTGGGCTCCAAGATCACATCCTGTGATGATGACACATGTGACCTTTGCGGCTACAACCAGAAACTCT
ACCCGTGCTGGGAGACCCAAGTTGGGCAGGAAATGTACAAGCTGATGATCTTCGACTTCATCATCATCTT
GGCTGTGACACTCTTCGTGGATTTTCCTAGAAAGCTCCTGGTGACCTACTGTTCCTCTTGCAAGCTGATT
CAGTGCTGGGGGCAGCAGGAGTTTGCCATTCCTGATAACGTCCTGGGGATAGTTTACGGGCAAACCATCT
GCTGGATCGGAGCCTTTTTCTCACCCCTTCTCCCTGCAATTGCAACCCTGAAATTCATTATCATCTTCTA
TGTGAAAGAGTGGAGTCTGCTTTACACCTGCAGACCCTCCCCCAGGCCGTTCAGAGCATCCAATTCTAAT
TTCTTCTTCCTGTTGGTGTTGTTGATCGGGCTGTGTTTGGCAATAATACCTCTGACAATCAGCATATCAC
GCATCCCTTCCTCGAAAGCCTGTGGGCCGTTCACCAACTTCAACACCACCTGGGAGGTCATCCCCAAGAC
GGTGAGCACCTTCCCCAGCTCGCTGCAGTCCTTCATCCATGGTGTCACATCCGAAGCCTTTGCAGTTCCT
TTCTTCATGATTATTTGCCTCATCATGTTTTACTTCATTGCCTTAGCTGGAGCACACAAACGGGTGGTCA
TCCAGCTCCGAGAGCAGCTATCCCTGGAAAGTCGTGACAAGTGCTACCTAATCCAGAAACTAACAGAAGC
CCAAAGGGACATGAGGAACTAA

Translation (613 aa):
MKYLSEWDQWKRYSSKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLI
IFMLVLLPVLLTKYKITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHY
TIDGVKFQNFTYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNR
SMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYAIYVATVFSQEH
MKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVF
TLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCSSCKLI
QCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSN
FFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTTWEVIPKTVSTFPSSLQSFIHGVTSEAFAVP
FFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEAQRDMRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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