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Report for CCDS53980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53980.1 Public Homo sapiens 16 UNKL 24 110 108 CCDS HistoryNCBI Gene:64718Re-query CCDS DB by CCDS ID:53980.1Re-query CCDS DB by GeneID:64718See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397464.5 ENSP00000380606.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397464.5Link to Ensembl Protein Viewer:ENSP00000380606.1Re-query CCDS DB by Nucleotide ID:ENST00000397464Re-query CCDS DB by Protein ID:ENSP00000380606
Original member Current member EBI ENST00000674376.1 ENSP00000501444.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674376.1Link to Ensembl Protein Viewer:ENSP00000501444.1Re-query CCDS DB by Nucleotide ID:ENST00000674376Re-query CCDS DB by Protein ID:ENSP00000501444
Original member Current member NCBI NM_001193389.2 NP_001180318.1 Accepted alive Link to Nucleotide Sequence:NM_001193389.2Link to Protein Sequence:NP_001180318.1Re-query CCDS DB by Nucleotide ID:NM_001193389Re-query CCDS DB by Protein ID:NP_001180318Link to BLAST:NP_001180318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180318.1 182 Q9H9P5-2 182 100% 0 0

Chromosomal Locations for CCDS 53980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1366240 1366395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1367242 1367349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1367656 1367858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1370130 1370211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGACGCCTCCCCAGCAGCCGCCACCCCTGCGTTCAGAGCCGGGCACACTGGGCTCTGCAGCCTCATCCT
ACAGCCCCCTAGGTTTGAACGGTGTCCCCGGGAGCATCTGGGACTTTGTTTCCGGCAGCTTCTCCCCCAG
CCCCTCCCCCATCCTGAGTGCCGGCCCCCCATCCTCTTCGAGTGCAAGTCCAAACGGAGCTGAGCTGGCC
CGGGTCAGGCGGCAGCTGGACGAGGCCAAGAGGAAGATCCGGCAGTGGGAGGAGTCCTGGCAGCAGGTGA
AGCAGGTCTGCGATGCCTGGCAGCGAGAGGCGCAGGAGGCCAAGGAGCGTGCCCGTGTGGCCGATAGCGA
CCGGCAGCTGGCGCTGCAGAAGAAGGAGGAGGTGGAGGCACAGGTGATCTTCCAGCTCCGCGCCAAGCAG
TGTGTGGCCTGCCGGGAGCGGGCCCACGGTGCTGTCCTGCGGCCCTGTCAGCACCACATCCTCTGTGAGC
CGTGTGCGGCCACCGCACCTGAGTGCCCCTACTGCAAGGGCCAGCCCCTGCAGTGGTGA

Translation (182 aa):
MTPPQQPPPLRSEPGTLGSAASSYSPLGLNGVPGSIWDFVSGSFSPSPSPILSAGPPSSSSASPNGAELA
RVRRQLDEAKRKIRQWEESWQQVKQVCDAWQREAQEAKERARVADSDRQLALQKKEEVEAQVIFQLRAKQ
CVACRERAHGAVLRPCQHHILCEPCAATAPECPYCKGQPLQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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