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Report for CCDS53966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53966.1 Public Homo sapiens 15 IL16 24 110 108 CCDS HistoryNCBI Gene:3603Re-query CCDS DB by CCDS ID:53966.1Re-query CCDS DB by GeneID:3603See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394660.6 ENSP00000378155.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394660.6Link to Ensembl Protein Viewer:ENSP00000378155.2Re-query CCDS DB by Nucleotide ID:ENST00000394660Re-query CCDS DB by Protein ID:ENSP00000378155
Original member Current member NCBI NM_001172128.2 NP_001165599.1 Accepted alive Link to Nucleotide Sequence:NM_001172128.2Link to Protein Sequence:NP_001165599.1Re-query CCDS DB by Nucleotide ID:NM_001172128Re-query CCDS DB by Protein ID:NP_001165599Link to BLAST:NP_001165599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165599.1 1331 Q14005-2 1331 100% 0 0

Chromosomal Locations for CCDS 53966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81225400 81225711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81259772 81259880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81265659 81265801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81269538 81269648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81273090 81273204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81278817 81278890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81279558 81279774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81282639 81282756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81285698 81285830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81290453 81290540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81292556 81293037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81296928 81297078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81299380 81300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81301344 81301512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81303549 81303650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81305908 81306166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81306423 81306545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81308605 81308798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3996 nt):
ATGGAGTCGCACAGCCGCGCTGGAAAGAGCAGAAAATCTGCAAAATTTCGGTCCATCTCCAGGTCCCTGA
TGCTCTGTAATGCTAAGACCAGTGATGATGGCTCTAGCCCTGATGAGAAATATCCTGATCCCTTTGAGAT
TTCCTTGGCCCAGGGCAAGGAGGGAATTTTCCACTCATCTGTGCAGCTGGCAGACACATCGGAGGCTGGG
CCCAGCAGTGTTCCTGATCTAGCACTGGCCTCGGAGGCTGCTCAACTCCAAGCAGCTGGGAATGATCGAG
GCAAGACCTGTAGGAGGATATTCTTCATGAAGGAATCTTCCACAGCTTCCTCTCGAGAAAAGCCTGGAAA
ACTAGAAGCACAAAGTAGTAACTTCCTGTTTCCTAAAGCCTGCCACCAAAGGGCACGCAGCAACTCAACC
AGTGTTAATCCCTATTGCACAAGAGAAATTGATTTTCCAATGACCAAGAAATCTGCAGCGCCCACGGACA
GGCAGCCTTACTCTCTCTGCAGTAACAGGAAGTCCCTCTCTCAACAATTGGACTGTCCAGCAGGAAAGGC
TGCGGGAACTTCGAGACCAACACGGTCCCTGAGCACAGCTCAGCTCGTGCAGCCATCTGGGGGCCTCCAG
GCTTCAGTCATCTCCAACATCGTGCTGATGAAGGGCCAGGCTAAGGGTCTGGGCTTCAGCATCGTTGGGG
GAAAAGACAGCATTTATGGCCCCATTGGGATTTACGTCAAAACCATTTTTGCAGGGGGAGCAGCAGCAGC
CGATGGAAGGCTACAGGAAGGTGATGAAATTCTGGAGCTCAATGGTGAATCAATGGCTGGACTAACACAT
CAGGATGCTTTGCAGAAGTTCAAGCAAGCCAAAAAGGGGCTCCTCACCCTCACCGTGAGAACCCGCCTGA
CGGCGCCTCCTTCCCTGTGCAGCCACCTGTCTCCCCCACTGTGCCGCTCCCTGAGCTCCAGCACTTGTAT
CACCAAGGACAGCAGCTCCTTCGCCTTGGAAAGCCCCTCGGCTCCCATCAGCACCGCCAAGCCCAATTAC
AGAATCATGGTGGAGGTTTCTCTGCAGAAAGAGGCCGGCGTGGGCCTGGGCATCGGCCTGTGCAGCGTTC
CCTACTTCCAATGCATCTCTGGCATTTTCGTCCACACGCTGTCACCAGGATCCGTGGCGCACCTGGACGG
ACGTCTCCGGTGTGGGGACGAGATTGTGGAAATCAGTGATTCCCCTGTGCACTGCCTGACGCTCAATGAA
GTCTACACGATCCTGAGTCACTGTGATCCCGGTCCAGTCCCCATCATTGTTAGCCGACATCCAGACCCAC
AGGTCTCTGAACAGCAACTCAAAGAAGCTGTGGCCCAGGCTGTGGAAAACACCAAGTTTGGAAAGGAGAG
GCATCAGTGGAGTCTGGAAGGTGTCAAAAGGCTGGAAAGCAGTTGGCACGGGCGGCCCACCTTGGAGAAG
GAACGAGAGAAGAACTCAGCACCCCCGCATCGCAGGGCTCAGAAGGTCATGATCCGCTCCAGCAGTGACA
GCAGCTACATGTCTGGGTCCCCAGGGGGAAGTCCTGGGAGTGGCAGTGCTGAGAAGCCGTCCTCTGACGT
GGACATCAGCACACACAGCCCCAGCTTGCCTCTGGCACGGGAGCCAGTGGTGCTTTCTATAGCATCCTCC
AGGCTGCCCCAGGAGAGCCCACCCCTCCCAGAGAGCCGGGACAGCCACCCGCCGCTGAGACTGAAGAAAT
CCTTTGAGATTTTGGTGAGAAAGCCTATGTCCTCCAAGCCCAAGCCTCCACCCAGAAAATACTTTAAAAG
TGACAGTGACCCTCAGAAGAGTCTGGAAGAGAGAGAGAACTCCTCATGCTCTTCTGGGCACACCCCACCC
ACCTGTGGCCAGGAAGCGAGAGAGCTGCTGCCACTGCTGCTACCACAGGAAGACACAGCAGGGAGAAGCC
CTAGTGCCTCTGCCGGCTGCCCAGGACCTGGTATCGGCCCACAGACCAAGTCCTCCACAGAGGGCGAGCC
AGGGTGGAGAAGAGCCAGCCCAGTGACCCAAACATCCCCGATAAAACACCCACTGCTTAAGAGGCAGGCT
CGGATGGACTATAGCTTTGATACCACAGCCGAAGACCCTTGGGTTAGGATTTCTGACTGCATCAAAAACT
TATTTAGCCCCATCATGAGTGAGAACCATGGCCACATGCCTCTACAGCCCAATGCCAGCCTGAATGAAGA
AGAAGGGACACAGGGCCACCCAGATGGGACCCCACCAAAGCTGGACACCGCCAATGGCACTCCCAAAGTT
TACAAGTCAGCAGACAGCAGCACTGTGAAGAAAGGTCCTCCTGTGGCTCCCAAGCCAGCCTGGTTTCGCC
AAAGCTTGAAAGGTTTGAGGAATCGTGCTTCAGACCCAAGAGGGCTCCCTGATCCTGCCTTGTCCACCCA
GCCAGCACCTGCTTCCAGGGAGCACCTAGGATCACACATCCGGGCCTCCTCCTCCTCCTCCTCCATCAGG
CAGAGAATCAGCTCCTTTGAAACCTTTGGCTCCTCTCAACTGCCTGACAAAGGAGCCCAGAGACTGAGCC
TCCAGCCCTCCTCTGGGGAGGCAGCAAAACCTCTTGGGAAGCATGAGGAAGGACGGTTTTCTGGACTCTT
GGGGCGAGGGGCTGCACCCACTCTTGTGCCCCAGCAGCCTGAGCAAGTACTGTCCTCGGGGTCCCCTGCA
GCCTCCGAGGCCAGAGACCCAGGTGTGTCTGAGTCCCCTCCCCCAGGGCGGCAGCCCAATCAGAAAACTC
TCCCCCCTGGCCCGGACCCGCTCCTAAGGCTGCTGTCAACACAGGCTGAGGAATCTCAAGGCCCAGTGCT
CAAGATGCCTAGCCAGCGAGCACGGAGCTTCCCCCTGACCAGGTCCCAGTCCTGTGAGACGAAGCTACTT
GACGAAAAGACCAGCAAACTCTATTCTATCAGCAGCCAAGTGTCATCGGCTGTCATGAAATCCTTGCTGT
GCCTTCCATCTTCTATCTCCTGTGCCCAGACTCCCTGCATCCCCAAGGAAGGGGCATCTCCAACATCATC
ATCCAACGAAGACTCAGCTGCAAATGGTTCTGCTGAAACATCTGCCTTGGACACAGGGTTCTCGCTCAAC
CTTTCAGAGCTGAGAGAATATACAGAGGGTCTCACGGAAGCCAAGGAAGACGATGATGGGGACCACAGTT
CCCTTCAGTCTGGTCAGTCCGTTATCTCCCTGCTGAGCTCAGAAGAATTAAAAAAACTCATCGAGGAGGT
GAAGGTTCTGGATGAAGCAACATTAAAGCAATTAGACGGCATCCATGTCACCATCTTACACAAGGAGGAA
GGTGCTGGTCTTGGGTTCAGCTTGGCAGGAGGAGCAGATCTAGAAAACAAGGTGATTACGGTTCACAGAG
TGTTTCCAAATGGGCTGGCCTCCCAGGAAGGGACTATTCAGAAGGGCAATGAGGTTCTTTCCATCAACGG
CAAGTCTCTCAAGGGGACCACGCACCATGATGCCTTGGCCATCCTCCGCCAAGCTCGAGAGCCCAGGCAA
GCTGTGATTGTCACAAGGAAGCTGACTCCAGAGGCCATGCCCGACCTCAACTCCTCCACTGACTCTGCAG
CCTCAGCCTCTGCAGCCAGTGATGTTTCTGTAGAATCTACAGAGGCCACAGTCTGCACGGTGACACTGGA
GAAGATGTCGGCAGGGCTGGGCTTCAGCCTGGAAGGAGGGAAGGGCTCCCTACACGGAGACAAGCCTCTC
ACCATTAACAGGATTTTCAAAGGAGCAGCCTCAGAACAAAGTGAGACAGTCCAGCCTGGAGATGAAATCT
TACAGCTGGGTGGCACTGCCATGCAGGGCCTCACACGGTTTGAAGCCTGGAACATCATCAAGGCACTGCC
TGATGGACCTGTCACGATTGTCATCAGGAGAAAAAGCCTCCAGTCCAAGGAAACCACAGCTGCTGGAGAC
TCCTAG

Translation (1331 aa):
MESHSRAGKSRKSAKFRSISRSLMLCNAKTSDDGSSPDEKYPDPFEISLAQGKEGIFHSSVQLADTSEAG
PSSVPDLALASEAAQLQAAGNDRGKTCRRIFFMKESSTASSREKPGKLEAQSSNFLFPKACHQRARSNST
SVNPYCTREIDFPMTKKSAAPTDRQPYSLCSNRKSLSQQLDCPAGKAAGTSRPTRSLSTAQLVQPSGGLQ
ASVISNIVLMKGQAKGLGFSIVGGKDSIYGPIGIYVKTIFAGGAAAADGRLQEGDEILELNGESMAGLTH
QDALQKFKQAKKGLLTLTVRTRLTAPPSLCSHLSPPLCRSLSSSTCITKDSSSFALESPSAPISTAKPNY
RIMVEVSLQKEAGVGLGIGLCSVPYFQCISGIFVHTLSPGSVAHLDGRLRCGDEIVEISDSPVHCLTLNE
VYTILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVENTKFGKERHQWSLEGVKRLESSWHGRPTLEK
EREKNSAPPHRRAQKVMIRSSSDSSYMSGSPGGSPGSGSAEKPSSDVDISTHSPSLPLAREPVVLSIASS
RLPQESPPLPESRDSHPPLRLKKSFEILVRKPMSSKPKPPPRKYFKSDSDPQKSLEERENSSCSSGHTPP
TCGQEARELLPLLLPQEDTAGRSPSASAGCPGPGIGPQTKSSTEGEPGWRRASPVTQTSPIKHPLLKRQA
RMDYSFDTTAEDPWVRISDCIKNLFSPIMSENHGHMPLQPNASLNEEEGTQGHPDGTPPKLDTANGTPKV
YKSADSSTVKKGPPVAPKPAWFRQSLKGLRNRASDPRGLPDPALSTQPAPASREHLGSHIRASSSSSSIR
QRISSFETFGSSQLPDKGAQRLSLQPSSGEAAKPLGKHEEGRFSGLLGRGAAPTLVPQQPEQVLSSGSPA
ASEARDPGVSESPPPGRQPNQKTLPPGPDPLLRLLSTQAEESQGPVLKMPSQRARSFPLTRSQSCETKLL
DEKTSKLYSISSQVSSAVMKSLLCLPSSISCAQTPCIPKEGASPTSSSNEDSAANGSAETSALDTGFSLN
LSELREYTEGLTEAKEDDDGDHSSLQSGQSVISLLSSEELKKLIEEVKVLDEATLKQLDGIHVTILHKEE
GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQ
AVIVTRKLTPEAMPDLNSSTDSAASASAASDVSVESTEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPL
TINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGD
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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