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Report for CCDS53831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53831.1 Public Homo sapiens 12 GPN3 24 110 108 CCDS HistoryNCBI Gene:51184Re-query CCDS DB by CCDS ID:53831.1Re-query CCDS DB by GeneID:51184See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543199.5 ENSP00000442770.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543199.5Link to Ensembl Protein Viewer:ENSP00000442770.1Re-query CCDS DB by Nucleotide ID:ENST00000543199Re-query CCDS DB by Protein ID:ENSP00000442770
Original member Current member NCBI NM_001164372.2 NP_001157844.1 Accepted alive Link to Nucleotide Sequence:NM_001164372.2Link to Protein Sequence:NP_001157844.1Re-query CCDS DB by Nucleotide ID:NM_001164372Re-query CCDS DB by Protein ID:NP_001157844Link to BLAST:NP_001157844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157844.1 323 Q9UHW5-3 323 100% 0 0

Chromosomal Locations for CCDS 53831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110453034 110453096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110453743 110453871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110455586 110455682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110455815 110455930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110457510 110457634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110459695 110459862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110465106 110465214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110468472 110468636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCTCCCCAAAACAAGAGGTGCCTTCCACTTCAGTATTCCAGATCCTCAGCACATTTGCAAATCGCGAG
GGTCACCATACAGGTCAAACGTCTGCACGCAAACCACGGACCGAAGCACGTGGCGCAAGGATGCGGAGCT
TTATCTGTTGTCCGTTATTACTCAGAGCACCTACTGTGCCACCATGGTCCAGCACTGTGAAGCCCTCAAC
CGGTCTGTCCAAGTTGTAAACCTGGATCCAGCAGCAGAACACTTCAACTACTCCGTGATGGCTGACATCC
GGGAACTGATCGAGGTGGATGATGTAATGGAGGATGATTCTCTGCGATTCGGTCCCAACGGAGGATTGGT
ATTTTGCATGGAGTACTTTGCCAATAATTTTGACTGGCTGGAGAACTGTCTTGGCCATGTAGAGGACGAC
TATATCCTTTTTGATTGTCCAGGTCAGATTGAGTTGTACACTCACCTGCCTGTGATGAAACAGCTGGTCC
AGCAGCTCGAGCAGTGGGAGTTCCGAGTCTGTGGAGTTTTTCTTGTTGATTCTCAGTTCATGGTGGAGTC
ATTCAAGTTTATTTCTGGCATCTTGGCAGCCCTGAGTGCCATGATCTCTCTAGAAATTCCGCAAGTCAAC
ATCATGACAAAAATGGATCTGCTGAGTAAAAAAGCAAAAAAGGAAATTGAGAAATTTTTAGATCCAGACA
TGTATTCTTTATTAGAAGATTCTACAAGTGACTTAAGAAGCAAAAAATTCAAGAAACTGACTAAAGCTAT
ATGTGGACTGATTGATGACTACAGCATGGTTCGATTTTTACCTTACGATCAGTCAGATGAAGAAAGCATG
AACATTGTATTGCAGCATATTGATTTTGCCATTCAATATGGAGAAGACCTAGAATTTAAAGAACCAAAGG
AACGTGAAGATGAGTCTTCCTCTATGTTTGACGAATATTTTCAAGAATGCCAGGATGAATGA

Translation (323 aa):
MLPKTRGAFHFSIPDPQHICKSRGSPYRSNVCTQTTDRSTWRKDAELYLLSVITQSTYCATMVQHCEALN
RSVQVVNLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGHVEDD
YILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVN
IMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDDYSMVRFLPYDQSDEESM
NIVLQHIDFAIQYGEDLEFKEPKEREDESSSMFDEYFQECQDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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