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Report for CCDS53819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53819.1 Public Homo sapiens 12 CDK17 24 110 108 CCDS HistoryNCBI Gene:5128Re-query CCDS DB by CCDS ID:53819.1Re-query CCDS DB by GeneID:5128See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543119.6 ENSP00000444459.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543119.6Link to Ensembl Protein Viewer:ENSP00000444459.2Re-query CCDS DB by Nucleotide ID:ENST00000543119Re-query CCDS DB by Protein ID:ENSP00000444459
Original member Current member NCBI NM_001170464.4 NP_001163935.1 Accepted alive Link to Nucleotide Sequence:NM_001170464.4Link to Protein Sequence:NP_001163935.1Re-query CCDS DB by Nucleotide ID:NM_001170464Re-query CCDS DB by Protein ID:NP_001163935Link to BLAST:NP_001163935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163935.1 523 Q00537-2 523 100% 0 0

Chromosomal Locations for CCDS 53819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 96280770 96280885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96282509 96282599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96283603 96283645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96286043 96286148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96286664 96286761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96289167 96289287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96294999 96295122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96297270 96297332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96297627 96297721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96298869 96298983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96300304 96300360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96311052 96311177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96313321 96313454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96323948 96324112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 96334719 96334836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAAAAAATTTAAGAGAAGGCTATCCCTCACACTCCGAGGAAGTCAGACTATTGATGAATCATTGTCTG
AATTGGCTGAACAAATGACTATTGAAGAAAACAGCAGCAAGGATAATGAGCCTATTGTGAAGAATGGCAG
GCCTCCAACGTCTCACAGTATGCATTCCTTCCTCCACCAGTACACAGGATCTTTCAAGAAGCCCCCATTG
CGGAGACCACACAGTGTTATTGGAGGGAGCCTTGGCTCCTTCATGGCAATGCCCAGAAATGGAAGCAGAT
TAGATATTGTTCATGAAAATCTAAAAATGGGATCAGATGGTGAGAGTGACCAAGCTTCTGGGACATCATC
TGATGAAGTCCAGTCACCTACAGGTGTTTGTCTCAGAAATCGTATACATAGACGGATCTCAATGGAGGAT
TTAAATAAGCGGTTATCACTGCCTGCAGACATCAGAATACCTGATGGATATCTTGAAAAGTTGCAGATAA
ACAGTCCACCATTTGACCAACCAATGAGTCGAAGGTCTCGTAGAGCTTCCTTATCAGAAATTGGCTTTGG
AAAAATGGAAACCTACATCAAATTGGAAAAGCTTGGAGAGGGTACATATGCAACAGTATATAAAGGAAGA
AGTAAATTGACAGAGAATTTGGTGGCATTAAAAGAGATCCGATTGGAACATGAAGAAGGTGCACCCTGCA
CAGCTATAAGAGAAGTTTCACTATTAAAGGATTTAAAACATGCAAATATAGTAACCTTACATGACATTGT
TCACACAGATAAATCCTTGACTTTGGTGTTTGAGTATCTGGATAAAGACCTGAAACAGTACATGGATGAC
TGTGGAAACATCATGAGTATGCACAACGTAAAGCTGTTTCTGTACCAAATTCTACGTGGTTTGGCATATT
GCCATAGAAGAAAGGTATTGCATCGAGACTTGAAACCACAGAACCTCCTCATTAATGAGAAAGGAGAATT
AAAGCTAGCAGATTTTGGACTAGCCCGAGCCAAGTCAGTTCCCACAAAGACCTACTCAAATGAAGTTGTC
ACACTATGGTACCGGCCACCTGATGTGCTTCTTGGTTCCTCGGAGTACTCAACACAGATTGACATGTGGG
GTGTTGGTTGCATTTTCTTTGAAATGGCTTCTGGAAGACCTTTATTTCCAGGATCAACCGTGGAAGATGA
ACTGCACTTAATTTTCCGACTGCTAGGAACTCCATCTCAGGAAACTTGGCCAGGTATTTCTTCAAATGAG
GAGTTCAAGAACTACAACTTTCCAAAATATAAACCACAGCCTCTAATTAACCACGCACCCAGGTTAGACT
CTGAAGGAATTGAGTTGATAACAAAATTTCTTCAGTATGAATCTAAGAAAAGGGTTTCAGCTGAAGAGGC
CATGAAACATGTGTACTTTCGAAGTCTGGGACCAAGAATACATGCTTTACCAGAAAGTGTATCAATATTC
AGTTTGAAAGAGATTCAGTTGCAAAAGGACCCGGGTTTTCGAAATTCTTCTTATCCAGAGACAGGTGTGT
TTGTCATAAACCATTTCACGTGTCGATCATGA

Translation (523 aa):
MKKFKRRLSLTLRGSQTIDESLSELAEQMTIEENSSKDNEPIVKNGRPPTSHSMHSFLHQYTGSFKKPPL
RRPHSVIGGSLGSFMAMPRNGSRLDIVHENLKMGSDGESDQASGTSSDEVQSPTGVCLRNRIHRRISMED
LNKRLSLPADIRIPDGYLEKLQINSPPFDQPMSRRSRRASLSEIGFGKMETYIKLEKLGEGTYATVYKGR
SKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDD
CGNIMSMHNVKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVV
TLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNE
EFKNYNFPKYKPQPLINHAPRLDSEGIELITKFLQYESKKRVSAEEAMKHVYFRSLGPRIHALPESVSIF
SLKEIQLQKDPGFRNSSYPETGVFVINHFTCRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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