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Report for CCDS53764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53764.1 Public Homo sapiens 12 ETFRF1 24 110 108 CCDS HistoryNCBI Gene:144363Re-query CCDS DB by CCDS ID:53764.1Re-query CCDS DB by GeneID:144363See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53764.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381356.9 ENSP00000370761.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381356.9Link to Ensembl Protein Viewer:ENSP00000370761.4Re-query CCDS DB by Nucleotide ID:ENST00000381356Re-query CCDS DB by Protein ID:ENSP00000370761
Original member Current member EBI ENST00000556927.6 ENSP00000450443.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556927.6Link to Ensembl Protein Viewer:ENSP00000450443.2Re-query CCDS DB by Nucleotide ID:ENST00000556927Re-query CCDS DB by Protein ID:ENSP00000450443
Original member Current member EBI ENST00000557540.7 ENSP00000450584.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557540.7Link to Ensembl Protein Viewer:ENSP00000450584.2Re-query CCDS DB by Nucleotide ID:ENST00000557540Re-query CCDS DB by Protein ID:ENSP00000450584
Original member Current member EBI ENST00000556351.6 ENSP00000452146.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556351.6Link to Ensembl Protein Viewer:ENSP00000452146.2Re-query CCDS DB by Nucleotide ID:ENST00000556351Re-query CCDS DB by Protein ID:ENSP00000452146
Original member Current member NCBI NM_001001660.3 NP_001001660.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001660.3Link to Protein Sequence:NP_001001660.2Re-query CCDS DB by Nucleotide ID:NM_001001660Re-query CCDS DB by Protein ID:NP_001001660Link to BLAST:NP_001001660.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001660.2 90 Q6IPR1 90 100% 0 0

Chromosomal Locations for CCDS 53764.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 25203957 25204007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 25204091 25204312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGAAAATGGCCAATTCTTTAAGAGGAGAAGTACTAAAACTTTATAAAAATCTGCTGTATCTTGGACGAG
ACTATCCAAAAGGAGCAGACTATTTTAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAA
GAATCCAGAGAAGATCAAAGAACTTATTGCACAGGGCGAATTTGTAATGAAAGAGCTAGAAGCTTTGTAC
TTCCTTAGGAAATACAGAGCTATGAAACAACGCTATTATTCAGATACCAACAAAACTAATTGA

Translation (90 aa):
MKMANSLRGEVLKLYKNLLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALY
FLRKYRAMKQRYYSDTNKTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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