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Report for CCDS53638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53638.1 Public Homo sapiens 11 MS4A12 24 110 108 CCDS HistoryNCBI Gene:54860Re-query CCDS DB by CCDS ID:53638.1Re-query CCDS DB by GeneID:54860See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53638.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537076.5 ENSP00000440424.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537076.5Link to Ensembl Protein Viewer:ENSP00000440424.1Re-query CCDS DB by Nucleotide ID:ENST00000537076Re-query CCDS DB by Protein ID:ENSP00000440424
Original member Current member NCBI NM_001164470.2 NP_001157942.1 Accepted alive Link to Nucleotide Sequence:NM_001164470.2Link to Protein Sequence:NP_001157942.1Re-query CCDS DB by Nucleotide ID:NM_001164470Re-query CCDS DB by Protein ID:NP_001157942Link to BLAST:NP_001157942.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157942.1 221 Q9NXJ0-2 221 100% 0 0

Chromosomal Locations for CCDS 53638.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60497319 60497594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60501983 60502039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60503701 60503817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60506728 60506838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60507020 60507124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGATGTCATCCAAGCCAACAAGCCATGCTGAAGTAAATGAAACCATACCCAACCCTTACCCACCAAGCA
GCTTTATGGCTCCTGGATTTCAACAGCCTCTGGGTTCAATCAACTTAGAAAACCAAGCTCAGGGTGCTCA
GCGTGCTCAGCCCTACGGCATCACATCTCCGGGAATCTTTGCTAGCAGTCAACCGGGTCAAGGAAATATA
CAAATGATAAATCCAAGTGTGGGAACAGCAGTAATGAACTTTAAAGAAGAAGCAAAGGCACTAGGGTTTA
TTATCTCTGGCTCTCTCTCTGTGTCAGCATCCAAGGAGCTTTCCCGTTGTCTGGTGAAAGGCAGCCTGGG
AATGAACATTGTTAGTTCTATCTTGGCCTTCATTGGAGTGATTCTGCTGCTGGTGGATATGTGCATCAAT
GGGGTAGCTGGCCAAGACTACTGGGCCGTGCTTTCTGGAAAAGGCATTTCAGCCACGCTGATGATCTTCT
CCCTCTTGGAGTTCTTCGTAGCTTGTGCCACAGCCCATTTTGCCAACCAAGCAAACACCACAACCAATAT
GTCTGTCCTGGTTATTCCAAATATGTATGAAAGCAACCCTGTGACACCAGCGTCTTCTTCAGCTCCTCCC
AGATGCAACAACTACTCAGCTAATGCCCCTAAATAG

Translation (221 aa):
MMSSKPTSHAEVNETIPNPYPPSSFMAPGFQQPLGSINLENQAQGAQRAQPYGITSPGIFASSQPGQGNI
QMINPSVGTAVMNFKEEAKALGFIISGSLSVSASKELSRCLVKGSLGMNIVSSILAFIGVILLLVDMCIN
GVAGQDYWAVLSGKGISATLMIFSLLEFFVACATAHFANQANTTTNMSVLVIPNMYESNPVTPASSSAPP
RCNNYSANAPK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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