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Report for CCDS53580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53580.1 Public Homo sapiens 10 PLEKHS1 24 110 108 CCDS HistoryNCBI Gene:79949Re-query CCDS DB by CCDS ID:53580.1Re-query CCDS DB by GeneID:79949See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369310.7 ENSP00000358316.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369310.7Link to Ensembl Protein Viewer:ENSP00000358316.3Re-query CCDS DB by Nucleotide ID:ENST00000369310Re-query CCDS DB by Protein ID:ENSP00000358316
Original member Current member NCBI NM_182601.2 NP_872407.1 Accepted alive Link to Nucleotide Sequence:NM_182601.2Link to Protein Sequence:NP_872407.1Re-query CCDS DB by Nucleotide ID:NM_182601Re-query CCDS DB by Protein ID:NP_872407Link to BLAST:NP_872407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872407.1 465 Q5SXH7-5 465 99.7849% 0 1

Chromosomal Locations for CCDS 53580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 113765381 113765390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113766411 113766499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113766612 113766718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113767345 113767479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113768815 113768890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113769784 113769900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113771970 113772089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113774227 113774333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113774826 113774993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113775765 113775866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113777124 113777259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113777410 113777640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCTGGAGGCAAACAATTTACATTTTCTTATGAAAATGAAGTCTGCAAACAAGATTACTTTATTAAAT
CACCACCTTCTCAGCTGTTCTCCTCTGTGACCTCTTGGAAAAAGCGGTTTTTCATCCTGTCAAAGGCTGG
GGAAAAGAGCTTTAGTCTTTCCTATTATAAAGACCATCATCACCGAGGTTCCATTGAAATTGATCAAAAT
TCCAGTGTAGAAGTTGGCATAAGTAGCCAGGAAAAGATGCAATCTGTGCAGAAGATGTTTAAATGCCACC
CTGATGAGGTCATGTCCATCAGAACCACTAACAGGGAATACTTCCTCATTGGCCACGACAGGGAGAAGAT
TAAAGACTGGGTCTCCTTCATGTCATCATTTCGCCAGGATATAAAAGCAACACAGCAGAACACAGAGGAG
GAACTCTCATTGGGTAATAAAAGAACCCTCTTCTACTCCAGCCCTCTCCTTGGCCCTTCCAGCACATCAG
AGGCTGTTGGCTCCAGCTCACCAAGAAATGGTCTCCAAGACAAGCATTTAATGGAACAAAGTTCTCCAGG
ATTTAGGCAAACTCACCTACAAGATTTATCAGAAGCCACTCAAGATGTGAAGGAAGAGAATCATTATCTT
ACTCCTCGAAGTGTTCTTTTAGAGTTGGATAATATCATTGCTTCCAGTGATTCTGGTGAATCCATTGAAA
CTGATGGTCCAGACCAGGTCTCTGGAAGAATTGAGTGTCATTATGAGCCAATGGAATCCTATTTTTTCAA
AGAGACATCCCATGAGTCTGTGGATAGCAGCAAAGAGGAACCCCAGACCCTTCCAGAGACCCAGGATGGG
GACCTCCACCTGCAAGAACAAGGCTCAGGAATTGATTGGTGTCTTTCCCCTGCCGATGTGGAAGCACAGA
CCACAAATGACCAAAAGGGTAATATCCCCGATGAAAGCCAAGTGGAGAAACTGAACGTTTTCCTTTCTCC
TCCTGATGTCATCAACTATCTTGCTCTCACAGAAGCCACAGGACGGATATGTGTGTCTCAGTGGGAAGGC
CCCCCACGTTTGGGATGCATATTTTGCCACGGAGATCATCTTCTGGCAGTGAATGACCTGAAACCCCAGA
GCCTGGAGGAGGTCTCCCTGTTTCTTACCCGGTCCATCCAGAAGGAGGACTCTTTCAGGATTCTTTCATA
TCAAGTAGCATTTGGAGAAGGCACTGAGCTAAGAGACAGAGCACCTGGGTTCAGGACCTCAGATCGGCAT
GATGTAGCAAAAAGAGCTTGCATGGAATCAGACTGGTGCAGGGATTCCAAAACAGCTCCTTCAACCAATT
TGTGCCTCAGTTTTCTTTTCTGTAAAATTATGACTAATGATGGTGCTGGTTGTTGGATAATTAAATGA

Translation (465 aa):
MAGGKQFTFSYENEVCKQDYFIKSPPSQLFSSVTSWKKRFFILSKAGEKSFSLSYYKDHHHRGSIEIDQN
SSVEVGISSQEKMQSVQKMFKCHPDEVMSIRTTNREYFLIGHDREKIKDWVSFMSSFRQDIKATQQNTEE
ELSLGNKRTLFYSSPLLGPSSTSEAVGSSSPRNGLQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYL
TPRSVLLELDNIIASSDSGESIETDGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDG
DLHLQEQGSGIDWCLSPADVEAQTTNDQKGNIPDESQVEKLNVFLSPPDVINYLALTEATGRICVSQWEG
PPRLGCIFCHGDHLLAVNDLKPQSLEEVSLFLTRSIQKEDSFRILSYQVAFGEGTELRDRAPGFRTSDRH
DVAKRACMESDWCRDSKTAPSTNLCLSFLFCKIMTNDGAGCWIIK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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