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Report for CCDS5344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5344.1 Public Homo sapiens 7 AIMP2 24 110 108 CCDS HistoryNCBI Gene:7965Re-query CCDS DB by CCDS ID:5344.1Re-query CCDS DB by GeneID:7965See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223029.8 ENSP00000223029.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223029.8Link to Ensembl Protein Viewer:ENSP00000223029.3Re-query CCDS DB by Nucleotide ID:ENST00000223029Re-query CCDS DB by Protein ID:ENSP00000223029
Original member Current member NCBI NM_006303.4 NP_006294.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006303.4Link to Protein Sequence:NP_006294.2Re-query CCDS DB by Nucleotide ID:NM_006303Re-query CCDS DB by Protein ID:NP_006294Link to BLAST:NP_006294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006294.2 320 Q13155-1 320 100% 0 0

Chromosomal Locations for CCDS 5344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6009364 6009498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6015146 6015352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6017814 6018045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6023303 6023691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGCCGATGTACCAGGTAAAGCCCTATCACGGGGGCGGCGCGCCTCTCCGTGTGGAGCTTCCCACCTGCA
TGTACCGGCTCCCCAACGTGCACGGCAGGAGCTACGGCCCAGCGCCGGGCGCTGGCCACGTGCAGGAAGA
GTCTAACCTGTCTCTGCAAGCTCTTGAGTCCCGCCAAGATGATATTTTAAAACGTCTGTATGAGTTGAAA
GCTGCAGTTGATGGCCTCTCCAAGATGATTCAAACACCAGATGCAGACTTGGATGTAACCAACATAATCC
AAGCGGATGAGCCCACGACTTTAACCACCAATGCGCTGGACTTGAATTCAGTGCTTGGGAAGGATTACGG
GGCGCTGAAAGACATCGTGATCAACGCAAACCCGGCCTCCCCTCCCCTCTCCCTGCTTGTGCTGCACAGG
CTGCTCTGTGAGCACTTCAGGGTCCTGTCCACGGTGCACACGCACTCCTCGGTCAAGAGCGTGCCTGAAA
ACCTTCTCAAGTGCTTTGGAGAACAGAATAAAAAACAGCCCCGCCAAGACTATCAGCTGGGATTCACTTT
AATTTGGAAGAATGTGCCGAAGACGCAGATGAAATTCAGCATCCAGACGATGTGCCCCATCGAAGGCGAA
GGGAACATTGCACGTTTCTTGTTCTCTCTGTTTGGCCAGAAGCATAATGCTGTCAACGCAACCCTTATAG
ATAGCTGGGTAGATATTGCGATTTTTCAGTTAAAAGAGGGAAGCAGTAAAGAAAAAGCCGCTGTTTTCCG
CTCCATGAACTCTGCTCTTGGGAAGAGCCCTTGGCTCGCTGGGAATGAACTCACCGTAGCAGACGTGGTG
CTGTGGTCTGTACTCCAGCAGATCGGAGGCTGCAGTGTGACAGTGCCAGCCAATGTGCAGAGGTGGATGA
GGTCTTGTGAAAACCTGGCTCCTTTTAACACGGCCCTCAAGCTCCTTAAGTGA

Translation (320 aa):
MPMYQVKPYHGGGAPLRVELPTCMYRLPNVHGRSYGPAPGAGHVQEESNLSLQALESRQDDILKRLYELK
AAVDGLSKMIQTPDADLDVTNIIQADEPTTLTTNALDLNSVLGKDYGALKDIVINANPASPPLSLLVLHR
LLCEHFRVLSTVHTHSSVKSVPENLLKCFGEQNKKQPRQDYQLGFTLIWKNVPKTQMKFSIQTMCPIEGE
GNIARFLFSLFGQKHNAVNATLIDSWVDIAIFQLKEGSSKEKAAVFRSMNSALGKSPWLAGNELTVADVV
LWSVLQQIGGCSVTVPANVQRWMRSCENLAPFNTALKLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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