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Report for CCDS5337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5337.1 Public Homo sapiens 7 RBAK 24 110 108 CCDS HistoryNCBI Gene:57786Re-query CCDS DB by CCDS ID:5337.1Re-query CCDS DB by GeneID:57786See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353796.7 ENSP00000275423.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353796.7Link to Ensembl Protein Viewer:ENSP00000275423.4Re-query CCDS DB by Nucleotide ID:ENST00000353796Re-query CCDS DB by Protein ID:ENSP00000275423
Original member Current member EBI ENST00000396912.2 ENSP00000380120.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396912.2Link to Ensembl Protein Viewer:ENSP00000380120.1Re-query CCDS DB by Nucleotide ID:ENST00000396912Re-query CCDS DB by Protein ID:ENSP00000380120
Original member Current member NCBI NM_001204456.2 NP_001191385.1 Accepted alive Link to Nucleotide Sequence:NM_001204456.2Link to Protein Sequence:NP_001191385.1Re-query CCDS DB by Nucleotide ID:NM_001204456Re-query CCDS DB by Protein ID:NP_001191385Link to BLAST:NP_001191385.1
Original member Current member NCBI NM_021163.4 NP_066986.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021163.4Link to Protein Sequence:NP_066986.1Re-query CCDS DB by Nucleotide ID:NM_021163Re-query CCDS DB by Protein ID:NP_066986Link to BLAST:NP_066986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191385.1 714 Q9NYW8-1 714 100% 0 0
NP_066986.1 714 Q9NYW8-1 714 100% 0 0

Chromosomal Locations for CCDS 5337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5048077 5048091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5057295 5057421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5057684 5057779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5063695 5065601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGAACACATTGCAGGGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGC
AG
CTGGACCCTGATGAGAAGATAACTTACAGGGATGTGATGTTGGAGAACTATAGCCATCTAGTTTCTGT
G
GGATATGATACCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCCGTGGATAATGGGA
GGT
GAATTTCCATGTCAACATAGTCCAGAAGCCTGGAGAGTTGATGACCTGATAGAGAGAATCCAAGAAA
AC
GAAGACAAACATTCAAGGCAAGCTGCTTGTATCAATAGCAAAACCCTGACTGAAGAGAAAGAGAATAC
A
TTTAGTCAAATTTACATGGAAACAAGCCTTGTTCCTTCAAGCATAATAGCTCATAATTGTGTCTCATGT
GGA
AAGAATTTAGAATCTATTTCGCAATTAATTAGTAGTGATGGAAGCTATGCTAGGACAAAACCTGATG
AG
TGTAATGAATGTGGGAAAACATATCATGGAGAGAAAATGTGTGAATTTAATCAAAATGGGGATACCTA
T
TCTCACAATGAAGAAAATATTCTTCAGAAAATTAGTATTTTGGAGAAACCCTTTGAATATAATGAATGC
ATG
GAAGCCTTAGACAATGAGGCTGTTTTTATTGCTCATAAGAGAGCTTACATAGGGGAGAAGCCCTATG
AG
TGGAATGATTCTGGACCAGACTTCATACAGATGTCAAATTTTAATGCATATCAGAGATCACAAATGGA
A
ATGAAGCCCTTTGAATGCAGTGAATGTGGAAAATCCTTCTGTAAAAAGTCAAAATTCATCATCCACCAG
AGG
GCTCACACAGGAGAGAAACCTTATGAATGTAATGTATGTGGGAAATCCTTCAGCCAAAAGGGAACCC
TC
ACTGTACATCGGAGATCACACTTAGAGGAGAAGCCCTATAAATGTAATGAATGTGGGAAAACCTTTTG
T
CAGAAGTTACACCTCACTCAACACCTAAGAACTCATTCAGGAGAGAAACCCTACGAATGTAGCGAATGT
GGG
AAAACCTTCTGCCAAAAGACACATCTCACCCTGCACCAGAGGAATCATTCAGGAGAGAGGCCCTATC
CA
TGTAACGAATGTGGGAAATCCTTCTCCCGCAAGTCTGCTCTCAGTGACCATCAGAGAACTCACACGGG
A
GAGAAGCTTTATAAATGTAATGAATGTGGGAAATCCTACTACCGAAAGTCTACTCTGATTACACATCAG
AGA
ACACACACGGGAGAGAAGCCCTATCAGTGTAGCGAGTGTGGGAAATTCTTTTCTCGGGTGTCATACC
TC
ACTATACATTATAGAAGTCATTTAGAAGAGAAACCCTATGAATGTAATGAATGTGGCAAAACCTTCAA
T
TTAAATTCAGCCTTCATTAGACATCGGAAAGTACACACAGAAGAGAAATCCCATGAATGTAGTGAATGT
GGA
AAGTTCTCTCAGTTGTATCTCACCGACCATCATACAGCTCATTTAGAAGAGAAACCCTATGAATGTA
AT
GAATGTGGGAAAACCTTCCTTGTAAATTCAGCCTTCGATGGGCACCAGCCACTTCCAAAAGGGGAGAA
A
TCCTATGAATGTAATGTATGTGGAAAGTTATTCAATGAGTTGTCATACTATACTGAACATTATAGAAGT
CAT
TCAGAAGAGAAACCTTATGGATGTAGCGAATGTGGGAAAACCTTTTCCCATAATTCATCCCTCTTCA
GA
CATCAAAGAGTACACACAGGCGAGAAACCCTATGAATGTTACGAATGTGGAAAATTCTTCTCTCAGAA
A
TCATATCTCACTATACATCATCGAATTCATTCAGGAGAGAAACCCTATGAATGTAGTAAATGTGGAAAA
GTC
TTCTCTCGGATGTCAAACCTCACTGTCCACTACAGAAGCCATTCAGGAGAGAAACCCTATGAATGTA
AT
GAATGTGGGAAAGTCTTTTCTCAGAAGTCATACCTCACTGTACACTATAGAACTCATTCAGGAGAGAA
A
CCCTATGAATGTAACGAGTGTGGGAAAAAATTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATT
CAT
AGAAGAGGAAATATGAACGTACTTGATGTGGAAAATCTCTGA


Translation (714 aa):
MNTLQGPVSFKDVAVDFTQEEWQQLDPDEKITYRDVMLENYSHLVSVGYDTTKPNVIIKLEQGEEPWIMG
G
EFPCQHSP
EAWRVDDLIERIQENEDKHSRQAACINSKTLTEEKENTFSQIYMETSLVPSSIIAHNCVSC
G
KNLESISQLISSDGSYARTKPDECNECGKTYHGEKMCEFNQNGDTYSHNEENILQKISILEKPFEYNEC
M
EALDNEAVFIAHKRAYIGEKPYEWNDSGPDFIQMSNFNAYQRSQMEMKPFECSECGKSFCKKSKFIIHQ
R
AHTGEKPYECNVCGKSFSQKGTLTVHRRSHLEEKPYKCNECGKTFCQKLHLTQHLRTHSGEKPYECSEC
G
KTFCQKTHLTLHQRNHSGERPYPCNECGKSFSRKSALSDHQRTHTGEKLYKCNECGKSYYRKSTLITHQ
R
THTGEKPYQCSECGKFFSRVSYLTIHYRSHLEEKPYECNECGKTFNLNSAFIRHRKVHTEEKSHECSEC
G
KFSQLYLTDHHTAHLEEKPYECNECGKTFLVNSAFDGHQPLPKGEKSYECNVCGKLFNELSYYTEHYRS
H
SEEKPYGCSECGKTFSHNSSLFRHQRVHTGEKPYECYECGKFFSQKSYLTIHHRIHSGEKPYECSKCGK
V
FSRMSNLTVHYRSHSGEKPYECNECGKVFSQKSYLTVHYRTHSGEKPYECNECGKKFHHRSAFNSHQRI
H
RRGNMNVLDVENL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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