CCDS Report for Consensus CDS

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Report for CCDS53364.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
53364.1	Public	Homo sapiens	1	SEMA6C	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53364.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000368913.7	ENSP00000357909.3		Accepted	alive
		NCBI	NM_001178061.3	NP_001171532.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001171532.1	962	Q9H3T2-3	962	100%	0	0

Chromosomal Locations for CCDS 53364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)

Genome Browser links:

Chromosome	Start	Stop
1	151132484	151133517
1	151133960	151134055
1	151134401	151134445
1	151134620	151134675
1	151134798	151134875
1	151135163	151135309
1	151135591	151135764
1	151136011	151136163
1	151136448	151136579
1	151136857	151137074
1	151137711	151137799
1	151137986	151138105
1	151138316	151138406
1	151138630	151138731
1	151139425	151139481
1	151139638	151139701
1	151139976	151140090
1	151142504	151142621

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2889 nt):
ATGCCCCGTGCCCCCCACTTCATGCCCTTGCTGCTACTGCTGCTGCTGCTCTCACTTCCCCATACTCAGG CCGCCTTTCCCCAGGACCCCCTCCCTCTGTTGATCTCTGACCTTCAAGGTACTTCCCCATTATCCTGGTT TCGGGGCCTGGAGGATGATGCTGTGGCTGCAGAACTTGGGCTGGACTTTCAGAGATTCCTGACCTTGAAC CGGACCTTGCTAGTGGCTGCCCGGGATCACGTTTTCTCCTTCGATCTTCAAGCCGAAGAAGAAGGGGAGG GGCTGGTGCCCAACAAGTATCTAACATGGAGAAGCCAAGATGTGGAGAACTGTGCTGTACGGGGAAAGCT GACGGATGAGTGCTACAACTATATTCGTGTTCTTGTTCCCTGGGACTCCCAGACGCTCCTTGCCTGTGGA ACGAACTCATTCAGCCCTGTGTGCCGCAGCTATGGGATAACTTCGCTGCAGCAGGAGGGTGAGGAACTGA GTGGGCAGGCTCGATGCCCCTTTGATGCCACCCAGTCCAACGTGGCCATCTTTGCAGAGGGCAGCCTGTA CTCAGCCACAGCTGCGGATTTCCAGGCCAGTGATGCTGTAGTTTACAGAAGCCTTGGGCCCCAGCCCCCA CTCCGCTCCGCCAAGTATGACTCCAAGTGGCTCCGAGAGCCACACTTTGTCCAGGCCTTGGAGCATGGAG ACCATGTCTACTTCTTCTTCCGCGAGGTCTCTGTGGAGGATGCTCGGCTGGGGAGGGTGCAGTTCTCCCG CGTAGCCCGAGTATGTAAACGTGACATGGGCGGCTCGCCTCGGGCCTTGGACCGCCACTGGACATCCTTC CTGAAGCTTCGGCTCAACTGCTCTGTCCCTGGGGACTCTACTTTCTATTTTGATGTTTTACAGGCCTTGA CTGGGCCTGTGAACCTGCATGGCCGCTCTGCTCTCTTTGGGGTCTTCACCACCCAGACCAATAGCATCCC TGGCTCTGCCGTCTGCGCCTTCTACCTGGATGAGATTGAGCGTGGGTTTGAGGGCAAGTTCAAGGAGCAG AGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAGAGTTCCCTCACCCAGGCCAGGATCCTGTG CAGGAGTAGGGGGAGCTGCCTTGTTCTCCTCTTCCCGAGACCTCCCTGATGATGTCCTGACCTTCATCAA GGCTCACCCGCTGCTGGACCCCGCTGTACCACCTGTCACCCATCAGCCTCTACTCACTCTCACTAGCAGG GCCCTACTGACCCAAGTAGCTGTGGATGGCATGGCTGGTCCCCACAGTAACATCACAGTCATGTTCCTTG GCTCCAATGATGGGACAGTGCTGAAGGTGCTGACCCCAGGTGGGCGATCCGGGGGACCTGAGCCCATCCT CCTGGAAGAGATTGATGCCTACAGCCCTGCCCGGTGCAGTGGGAAGCGGACAGCCCAAACAGCACGACGG ATCATAGGGCTGGAGCTGGACACTGAGGGTCACAGGCTTTTTGTGGCTTTTTCTGGCTGTATTGTCTACC TCCCTCTCAGCCGGTGTGCCCGGCATGGGGCCTGTCAGAGGAGCTGTTTGGCTTCTCAGGACCCATACTG TGGATGGCATAGCTCCAGGGGCTGTGTGGATATCAGGGGATCTGGTGGGACTGATGTGGATCAGGCTGGG AACCAGGAATCCATGGAGCATGGTGACTGCCAAGATGGAGCTACTGGGAGTCAGTCTGGCCCTGGGGATT CTGCTTATGTGCTTCCGGGTCCTGGCCCTTCCCCTGGGACCCCCAGTCCTCCCAGTGATGCCCACCCCCG GCCCCAGTCTTCCACTCTTGGAGTTCACACTCGGGGCGTGCGCCGGGACCTGCCCCCAGCCTCGGCCTCC CGCTCCGTCCCCATCCCACTCCTCCTGGCCAGTGTGGCCGCAGCTTTTGCCCTGGGCGCCTCAGTCTCTG GCCTCCTGGTCTCCTGTGCTTGTCGCCGCGCCCACCGACGTCGGGGCAAGGACATCGAGACTCCGGGGCT CCCGCGCCCTCTCTCCCTCCGCAGTTTGGCCCGGCTCCACGGTGGGGGCCCAGAGCCCCCGCCGCCCTCC AAGGACGGGGACGCGGTGCAGACGCCGCAGCTCTACACCACCTTCCTGCCGCCTCCGGAGGGCGTGCCCC CGCCGGAGCTGGCCTGCCTGCCCACCCCCGAGTCCACGCCGGAGCTGCCGGTCAAGCACCTCCGCGCCGC CGGGGACCCCTGGGAGTGGAACCAGAACAGGAACAACGCCAAGGAGGGTCCGGGCCGCTCACGGGGCGGG CACGCGGCGGGCGGGCCCGCGCCCCGCGTGCTGGTGAGGCCACCGCCGCCCGGCTGTCCCGGGCAGGCCG TGGAAGTCACCACCCTGGAGGAACTGCTGCGCTACCTGCACGGCCCGCAGCCGCCCAGAAAGGGGGCCGA GCCCCCCGCCCCTTTAACCTCGCGGGCGCTCCCGCCGGAGCCCGCCCCCGCCCTCTTGGGCGGCCCCAGC CCCAGGCCCCACGAGTGCGCCTCGCCGCTGAGGCTGGACGTGCCCCCCGAGGGCAGGTGCGCCTCTGCCC CCGCCCGGCCCGCGCTCTCCGCCCCCGCTCCCCGGCTGGGCGTCGGCGGAGGCCGGAGGTTGCCTTTCTC CGGCCACCGGGCCCCCCCTGCCCTGCTCACTCGAGTCCCCTCGGGAGGTCCCTCCAGGTACTCCGGGGGT CCCGGGAAGCACCTCCTGTACCTGGGCCGGCCCGAGGGCTACCGGGGCCGCGCCCTGAAAAGGGTGGACG TCGAGAAGCCCCAGTTGTCCCTGAAGCCTCCCCTCGTCGGGCCCTCCTCCCGCCAGGCCGTCCCGAACGG CGGCCGTTTCAACTTTTAA
Translation (962 aa):
MPRAPHFMPLLLLLLLLSLPHTQAAFPQDPLPLLISDLQGTSPLSWFRGLEDDAVAAELGLDFQRFLTLN RTLLVAARDHVFSFDLQAEEEGEGLVPNKYLTWRSQDVENCAVRGKLTDECYNYIRVLVPWDSQTLLACG TNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSNVAIFAEGSLYSATAADFQASDAVVYRSLGPQPP LRSAKYDSKWLREPHFVQALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSF LKLRLNCSVPGDSTFYFDVLQALTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDEIERGFEGKFKEQ RSLDGAWTPVSEDRVPSPRPGSCAGVGGAALFSSSRDLPDDVLTFIKAHPLLDPAVPPVTHQPLLTLTSR ALLTQVAVDGMAGPHSNITVMFLGSNDGTVLKVLTPGGRSGGPEPILLEEIDAYSPARCSGKRTAQTARR IIGLELDTEGHRLFVAFSGCIVYLPLSRCARHGACQRSCLASQDPYCGWHSSRGCVDIRGSGGTDVDQAG NQESMEHGDCQDGATGSQSGPGDSAYVLPGPGPSPGTPSPPSDAHPRPQSSTLGVHTRGVRRDLPPASAS RSVPIPLLLASVAAAFALGASVSGLLVSCACRRAHRRRGKDIETPGLPRPLSLRSLARLHGGGPEPPPPS KDGDAVQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRAAGDPWEWNQNRNNAKEGPGRSRGG HAAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKGAEPPAPLTSRALPPEPAPALLGGPS PRPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGG PGKHLLYLGRPEGYRGRALKRVDVEKPQLSLKPPLVGPSSRQAVPNGGRFNF

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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