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Report for CCDS53341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53341.1 Public Homo sapiens 1 MTF2 24 110 108 CCDS HistoryNCBI Gene:22823Re-query CCDS DB by CCDS ID:53341.1Re-query CCDS DB by GeneID:22823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540243.5 ENSP00000443295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540243.5Link to Ensembl Protein Viewer:ENSP00000443295.1Re-query CCDS DB by Nucleotide ID:ENST00000540243Re-query CCDS DB by Protein ID:ENSP00000443295
Original member Current member EBI ENST00000545708.5 ENSP00000444962.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545708.5Link to Ensembl Protein Viewer:ENSP00000444962.1Re-query CCDS DB by Nucleotide ID:ENST00000545708Re-query CCDS DB by Protein ID:ENSP00000444962
Original member Current member NCBI NM_001164391.2 NP_001157863.1 Accepted alive Link to Nucleotide Sequence:NM_001164391.2Link to Protein Sequence:NP_001157863.1Re-query CCDS DB by Nucleotide ID:NM_001164391Re-query CCDS DB by Protein ID:NP_001157863Link to BLAST:NP_001157863.1
Original member Current member NCBI NM_001164393.2 NP_001157865.1 Accepted alive Link to Nucleotide Sequence:NM_001164393.2Link to Protein Sequence:NP_001157865.1Re-query CCDS DB by Nucleotide ID:NM_001164393Re-query CCDS DB by Protein ID:NP_001157865Link to BLAST:NP_001157865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157863.1 491 Q9Y483-3 491 100% 0 0
NP_001157865.1 491 Q9Y483-3 491 100% 0 0

Chromosomal Locations for CCDS 53341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93114708 93114783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93114988 93115088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93115470 93115618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93118345 93118440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93119333 93119401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93120549 93120672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93127232 93127299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93129278 93129448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93133703 93133808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93133928 93133980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93134091 93134195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93136670 93137027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTG
GCCAAGGATATCATCAGTTGTGTCACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATG
GCTCTGTCGGCAGTGTGTTTTTGCAACAACAACAAAGAGGGGTGGTGCACTTAAGAAAGGACCAAATGCC
AAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATA
AAACCAATGTCCAGCAGTGTTACTGCTATTGTGGAGGCCCTGGAGACTGGTATTTGAAGATGCTACAGTG
CTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTGCAATGCCTTCAAAAGCCAATGCTATTTGGAGAC
AGATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGT
GGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCTGA
ACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAGCTGGCAGACACACCA
AAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCATGTTTATGTCTGGGAAAG
AAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTT
CAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCT
ATATCTGATTCAAGGGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCAC
CTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTGGATAAGGAATCAATTTCAGA
GAATCCTACTTTGGATTTACCTTGTTCTATAGGGAGAACTGAGGGAACTGCACATTCATCCAATACCTCA
GATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTTCCAGGCATTATGGAT
TATCTGACTCCAGAAAAAGAACGCGTACAGGAAGATCTTGGCCTGCTGCAATACCACATTTGCGGAGAAG
AAGAGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAGATGATGAAGGCAAA
GAAGATTATCAGTTTGATGAACTCAACACAGAGATTCTGAATAACTTAGCAGATCAGGAGTTACAACTCA
ATCATCTAAAGAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGCGAAAAATACCG
AGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTGCA
TCCTGA

Translation (491 aa):
MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNA
KALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQKPMLFGD
RFYTFICSVCSSGPEYLKRLPLQWVDIAHLCLYNLSVIHKKKYFDSELELMTYINENWDRLHPGELADTP
KSERYEHVLEALNDYKTMFMSGKEIKKKKHLFGLRIRVPPVPPNVAFKAEKEPEGTSHEFKIKGRKASKP
ISDSREVSNGIEKKGKKKSVGRPPGPYTRKMIQKTAEPLLDKESISENPTLDLPCSIGRTEGTAHSSNTS
DVDFTGASSAKETTSSSISRHYGLSDSRKRTRTGRSWPAAIPHLRRRRGRLPRRALQTQNSEIVKDDEGK
EDYQFDELNTEILNNLADQELQLNHLKNSITSYFGAAGRIACGEKYRVLARRVTLDGKVQYLVEWEGATA
S


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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