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Report for CCDS53338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53338.1 Public Homo sapiens 1 ZNHIT6 24 110 108 CCDS HistoryNCBI Gene:54680Re-query CCDS DB by CCDS ID:53338.1Re-query CCDS DB by GeneID:54680See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431532.6 ENSP00000414344.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431532.6Link to Ensembl Protein Viewer:ENSP00000414344.2Re-query CCDS DB by Nucleotide ID:ENST00000431532Re-query CCDS DB by Protein ID:ENSP00000414344
Original member Current member NCBI NM_001170670.2 NP_001164141.1 Accepted alive Link to Nucleotide Sequence:NM_001170670.2Link to Protein Sequence:NP_001164141.1Re-query CCDS DB by Nucleotide ID:NM_001170670Re-query CCDS DB by Protein ID:NP_001164141Link to BLAST:NP_001164141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164141.1 431 Q9NWK9-2 431 100% 0 0

Chromosomal Locations for CCDS 53338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85654058 85654098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85657847 85657971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85677236 85677313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85678701 85678781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85680836 85680904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85702157 85702260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85706078 85706163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85706249 85706355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85706442 85706507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85707629 85707936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85708054 85708284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGAGTTTGCTGCTGAAAATGAAGGGAAGTCTGGGGGAGGTCTCCACAGCGTAGCTGAGGGGGTGCGGC
TAAGTCCAGAGCCTGGCAGGGAGGGAGTAAGGGACTTAGCAGGGGCGGAGGAGTTCGGCGGCGGAGAGGA
GGGGACAGGGCTGACAGGGATAAAGGAGATAGGGGATGGAGAGGAAGGAAGTGGACAAAGGCCAGAGGAA
ATACCGATGGACCTAACGGTAGTGAAGCAGGAGACGGATAGTAGTTTAGTGGTAAAAGAAGCGAAGGTGG
GTGAACCAGAGGTAAAGGAAGAGAAGGTAAAGGAAGAGGTAATGGACTGGTCAGAAGTGAAGGAAGAGAA
GGATAACTTGGAGATAAAACAGGAGGAGAAGTTTGTTGGTCAATGCATAAAAGAGGAATTGATGCATGGA
GAGTGTGTAAAAGAAGAGAAGGATTTCCTGAAGAAAGAAATCGTGGATGATACAAAGGTGAAAGAAGAGC
CTCCGATAAATCACCCGGTGGGCTGCAAGCGGAAACTGGCCATGTCAAGGTGTGAGACTTGTGGTACAGA
AGAAGCAAAGTACAGATGTCCACGTTGTATGCGATATTCCTGCAGTTTGCCCTGTGTAAAGAAACACAAA
GCAGAACTGACATGTAATGGAGTTCGAGATAAAACTGCATACATTTCAATACAACAGTTTACTGAAATGA
ATCTCCTAAGTGATTATCGATTTTTGGAAGATGTGGCAAGAACAGCGGACCATATTTCTAGAGATGCTTT
TTTGAAGAGACCAATAAGCAATAAATATATGTACTTTATGAAAAATCGTGCCCGGAGGCAAGGTATTAAC
TTAAAACTTCTACCCAATGGATTCACCAAGAGGAAGGAGAATTCAACCTTTTTTGATAAGAAAAAACAAC
AGTTTTGTTGGCATGTGAAGCTCCAGTTTCCTCAAAGTCAAGCTGAGTACATAGAAAAAAGAGTACCAGA
TGATAAAACTATTAATGAAATCCTAAAACCTTACATTGATCCTGAAAAGTCTGATCCTGTAATTCGTCAA
AGGTTGAAAGCCTACATTCGCTCTCAGACTGGGGTTCAGATTTTAATGAAGATTGAATATATGCAGCAAA
ATTTAGTAAGATATTATGAACTAGATCCTTATAAAAGTCTCCTAGACAATTTGAGGAACAAAGTGATCAT
TGAGTATCCAACATTACATGTGGTATTGAAAGGATCCAATAATGACATGAAAGTTCTTCACCAAGTGAAG
AGTGAATCTACCAAGAACGTTGGCAATGAAAATTGA

Translation (431 aa):
MEFAAENEGKSGGGLHSVAEGVRLSPEPGREGVRDLAGAEEFGGGEEGTGLTGIKEIGDGEEGSGQRPEE
IPMDLTVVKQETDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQEEKFVGQCIKEELMHG
ECVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHK
AELTCNGVRDKTAYISIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPISNKYMYFMKNRARRQGIN
LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYIDPEKSDPVIRQ
RLKAYIRSQTGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVIIEYPTLHVVLKGSNNDMKVLHQVK
SESTKNVGNEN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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