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Report for CCDS53296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53296.1 Public Homo sapiens 1 TMEM35B 24 110 108 CCDS HistoryNCBI Gene:100506144Re-query CCDS DB by CCDS ID:53296.1Re-query CCDS DB by GeneID:100506144See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373337.4 ENSP00000362435.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373337.4Link to Ensembl Protein Viewer:ENSP00000362435.3Re-query CCDS DB by Nucleotide ID:ENST00000373337Re-query CCDS DB by Protein ID:ENSP00000362435
Original member Current member NCBI NM_001195156.2 NP_001182085.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195156.2Link to Protein Sequence:NP_001182085.1Re-query CCDS DB by Nucleotide ID:NM_001195156Re-query CCDS DB by Protein ID:NP_001182085Link to BLAST:NP_001182085.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182085.1 154 Q8NCS4 154 100% 0 0

Chromosomal Locations for CCDS 53296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 34981944 34982119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34983767 34983947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 34985198 34985305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGCTCCTGCTTTCGGTGCTGCGTGTACTGCTGGGCGGCTTCTTCGCGCTCGTGGGGTTGGCCAAGC
TCTCGGAGGAGATCTCGGCTCCAGTTTCGGAGCGGATGAATGCCCTGTTCGTGCAGTTTGCTGAGGTGTT
CCCGCTGAAGGTATTTGGCTACCAGCCAGATCCCCTGAACTACCAAATAGCTGTGGGCTTTCTGGAACTG
CTGGCTGGGTTGCTGCTGGTCATGGGCCCACCGATGCTGCAAGAGATCAGTAACTTGTTCTTGATTCTGC
TCATGATGGGGGCTATCTTCACCTTGGCAGCTCTGAAAGAGTCACTAAGCACCTGTATCCCAGCCATTGT
CTGCCTGGGGTTCCTGCTGCTGCTGAATGTCGGCCAGCTCTTAGCCCAGACTAAGAAGGTGGTCAGACCC
ACTAGGAAGAAGACTCTAAGTACATTCAAGGAATCCTGGAAGTAG

Translation (154 aa):
MALLLSVLRVLLGGFFALVGLAKLSEEISAPVSERMNALFVQFAEVFPLKVFGYQPDPLNYQIAVGFLEL
LAGLLLVMGPPMLQEISNLFLILLMMGAIFTLAALKESLSTCIPAIVCLGFLLLLNVGQLLAQTKKVVRP
TRKKTLSTFKESWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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