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Report for CCDS53276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53276.1 Public Homo sapiens 1 RAP1GAP 24 110 108 CCDS HistoryNCBI Gene:5909Re-query CCDS DB by CCDS ID:53276.1Re-query CCDS DB by GeneID:5909See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542643.6 ENSP00000441661.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542643.6Link to Ensembl Protein Viewer:ENSP00000441661.1Re-query CCDS DB by Nucleotide ID:ENST00000542643Re-query CCDS DB by Protein ID:ENSP00000441661
Original member Current member NCBI NM_001145657.3 NP_001139129.1 Accepted alive Link to Nucleotide Sequence:NM_001145657.3Link to Protein Sequence:NP_001139129.1Re-query CCDS DB by Nucleotide ID:NM_001145657Re-query CCDS DB by Protein ID:NP_001139129Link to BLAST:NP_001139129.1
Original member Current member NCBI NM_001388226.1 NP_001375155.1 Accepted alive Link to Nucleotide Sequence:NM_001388226.1Link to Protein Sequence:NP_001375155.1Re-query CCDS DB by Nucleotide ID:NM_001388226Re-query CCDS DB by Protein ID:NP_001375155Link to BLAST:NP_001375155.1
Original member Current member NCBI NM_001388227.1 NP_001375156.1 Accepted alive Link to Nucleotide Sequence:NM_001388227.1Link to Protein Sequence:NP_001375156.1Re-query CCDS DB by Nucleotide ID:NM_001388227Re-query CCDS DB by Protein ID:NP_001375156Link to BLAST:NP_001375156.1
Original member Current member NCBI NM_001388228.1 NP_001375157.1 Accepted alive Link to Nucleotide Sequence:NM_001388228.1Link to Protein Sequence:NP_001375157.1Re-query CCDS DB by Nucleotide ID:NM_001388228Re-query CCDS DB by Protein ID:NP_001375157Link to BLAST:NP_001375157.1
Original member Current member NCBI NM_001388229.1 NP_001375158.1 Accepted alive Link to Nucleotide Sequence:NM_001388229.1Link to Protein Sequence:NP_001375158.1Re-query CCDS DB by Nucleotide ID:NM_001388229Re-query CCDS DB by Protein ID:NP_001375158Link to BLAST:NP_001375158.1
Original member Current member NCBI NM_001388230.1 NP_001375159.1 Accepted alive Link to Nucleotide Sequence:NM_001388230.1Link to Protein Sequence:NP_001375159.1Re-query CCDS DB by Nucleotide ID:NM_001388230Re-query CCDS DB by Protein ID:NP_001375159Link to BLAST:NP_001375159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139129.1 681 P47736-2 681 100% 0 0
NP_001375155.1 681 P47736-2 681 100% 0 0
NP_001375156.1 681 P47736-2 681 100% 0 0
NP_001375157.1 681 P47736-2 681 100% 0 0
NP_001375158.1 681 P47736-2 681 100% 0 0
NP_001375159.1 681 P47736-2 681 100% 0 0

Chromosomal Locations for CCDS 53276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21597720 21597728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21597961 21598040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21598400 21598502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21599494 21599617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21601684 21601797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21602804 21602913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21603835 21603912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21606066 21606197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21608213 21608350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21608850 21608936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21609575 21609646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21610120 21610275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21611452 21611581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21611716 21611816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21612026 21612109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21613176 21613229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21613628 21613706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21613986 21614089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21617306 21617491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21617934 21617972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21619025 21619072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21620015 21620032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGATTGAGAAGATGCAGGGAAGCAGGATGGATGAACAACGCTGCTCCTTCCCGCCGCCCCTCAAAACAG
AGGAGGACTACATTCCATACCCGAGCGTGCACGAGGTCTTGGGGCGAGAAGGACCCTTCCCCCTCATCCT
GCTGCCCCAGTTTGGGGGCTACTGGATTGAGGGCACCAACCACGAAATCACCAGCATCCCCGAGACAGAG
CCACTGCAGTCGCCCACAACCAAGGTGAAGCTCGAGTGCAACCCCACAGCCCGCATCTACCGGAAGCACT
TTCTCGGCAAGGAGCATTTCAATTACTACTCACTGGACGCTGCCCTCGGCCACCTTGTCTTCTCACTCAA
GTACGATGTCATCGGGGACCAAGAGCACCTGCGGCTGCTGCTCAGGACCAAGTGCCGGACATACCATGAT
GTCATCCCCATCTCCTGCCTCACCGAGTTCCCTAATGTTGTCCAGATGGCAAAGTTGGTGTGTGAAGACG
TCAATGTGGATCGGTTCTATCCTGTGCTCTACCCCAAGGCTTCCCGGCTCATCGTCACCTTTGACGAGCA
TGTCATCAGCAATAACTTCAAGTTTGGCGTCATTTATCAGAAGCTTGGGCAGACCTCCGAGGAAGAACTC
TTCAGCACCAATGAGGAAAGTCCCGCTTTCGTGGAGTTCCTTGAATTTCTTGGCCAGAAGGTCAAACTGC
AGGACTTTAAGGGGTTCCGAGGAGGCCTGGACGTGACCCACGGGCAGACGGGGACCGAATCTGTGTACTG
CAACTTCCGCAACAAGGAGATCATGTTTCACGTGTCCACCAAGCTGCCATACACGGAAGGGGACGCCCAG
CAGTTGCAGCGGAAGCGGCACATCGGGAACGACATCGTGGCTGTGGTCTTCCAGGATGAGAACACTCCTT
TCGTGCCCGACATGATCGCGTCCAACTTCCTGCATGCCTACGTCGTGGTGCAGGCTGAGGGCGGGGGCCC
TGATGGCCCCCTCTACAAGGTCTCTGTCACTGCAAGAGATGATGTGCCCTTCTTTGGACCCCCCCTCCCG
GACCCCGCTGTGTTCAGGAAGGGGCCTGAGTTCCAGGAATTTTTGCTGACAAAGCTGATCAATGCTGAAT
ATGCCTGCTACAAGGCAGAGAAGTTTGCCAAACTGGAGGAGCGGACGCGGGCCGCCCTCCTGGAGACGCT
CTATGAGGAACTACACATCCACAGCCAGTCCATGATGGGCTTGGGCGGCGACGAGGACAAGATGGAGAAT
GGCAGTGGGGGCGGCGGCTTCTTTGAGTCTTTCAAGCGGGTCATCCGGAGCCGCAGCCAGTCCATGGATG
CCATGGGGCTGAGCAACAAGAAGCCCAACACCGTGTCCACCAGCCACAGCGGGAGCTTCGCGCCCAACAA
CCCCGACCTGGCCAAGGCGGCTGGAATATCATTGCTTATTCCTGGGAAAAGTGCGAGTAGATTCGGACGC
CGGGGCAGTGCCATAGGCATAGGAACCGTGGAAGAGTCACTGATTGTCCCTGGGAAGAGCCCCACGAGGA
AGAAGTCGGGCCCGTTCGGCTCCCGCCGCAGCAGCGCCATTGGCATCGAGAACATACAGGAGGTGCAGGA
GAAGAGGGAGAGCCCTCCGGCTGGTCAGAAGACCCCAGACAGCGGGCACGTCTCACAGGAGCCCAAGTCG
GAGAACTCATCCACTCAGAGCTCCCCAGAGATGCCCACGACCAAGAACAGAGCGGAGACCGCAGCGCAGA
GAGCAGAGGCGCTCAAGGACTTCTCCCGCTCCTCGTCCAGTGCCAGCAGCTTCGCCAGCGTGGTGGAGGA
GACGGAGGGTGTGGACGGAGAGGACACAGGCCTGGAGAGCGTGTCATCCTCAGGAACACCCCACAAGCGG
GACTCCTTCATCTATAGCACGTGGCTGGAGGACAGTGTCAGCACCACTAGTGGGGGCAGCTCCCCAGACG
CCGGCAAGTTGGGGGACCCTGCGTGTCCCGAGATCAAGATCCAGCTGGAAGCATCTGAGCAGCACATGCC
CCAGCTGGGCTGTTAG

Translation (681 aa):
MIEKMQGSRMDEQRCSFPPPLKTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEITSIPETE
PLQSPTTKVKLECNPTARIYRKHFLGKEHFNYYSLDAALGHLVFSLKYDVIGDQEHLRLLLRTKCRTYHD
VIPISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEEL
FSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQ
QLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLP
DPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSMMGLGGDEDKMEN
GSGGGGFFESFKRVIRSRSQSMDAMGLSNKKPNTVSTSHSGSFAPNNPDLAKAAGISLLIPGKSASRFGR
RGSAIGIGTVEESLIVPGKSPTRKKSGPFGSRRSSAIGIENIQEVQEKRESPPAGQKTPDSGHVSQEPKS
ENSSTQSSPEMPTTKNRAETAAQRAEALKDFSRSSSSASSFASVVEETEGVDGEDTGLESVSSSGTPHKR
DSFIYSTWLEDSVSTTSGGSSPDAGKLGDPACPEIKIQLEASEQHMPQLGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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