NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53198.1 Public Mus musculus X Slc25a53 23 108 98 CCDS HistoryNCBI Gene:67062Re-query CCDS DB by CCDS ID:53198.1Re-query CCDS DB by GeneID:67062See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171738.1 ENSMUSP00000132572.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171738.1Link to Ensembl Protein Viewer:ENSMUSP00000132572.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171738Re-query CCDS DB by Protein ID:ENSMUSP00000132572
Original member Current member NCBI NM_001114179.1 NP_001107651.1 Accepted alive Link to Nucleotide Sequence:NM_001114179.1Link to Protein Sequence:NP_001107651.1Re-query CCDS DB by Nucleotide ID:NM_001114179Re-query CCDS DB by Protein ID:NP_001107651Link to BLAST:NP_001107651.1

Chromosomal Locations for CCDS 53198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136982670 136983590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGAGGAGCAGGACAACACTGCTGGGAAGAAGCTGCAGCACCAGACCCGAGCAGAAGCTCCAGGAACGA
AAAGCTGGCAGTCACAGGCCTACACCCTTGGGGCGATTTCCAACTTTATGTCTACTTTCCTGACCTTTCC
TATCTATAAGGTTGTGTTCCGGCAGCAGATCCATGCTGTGGCCCTGTCAGAGGCTGTGAAACAGCTTTGG
CATGAAGGCCCTCAGTACTTCTACCGGGGCATCTACCCTCCTCTTCTCTCCAAGACCCTCCAAGGGACTC
TGTTGTTTGGCACTTATGATAGTTTGCTGTGCTTTCTTTCCCCGGTTGGGCCACACTCCCTTGGACAGCG
CTGGACTGCAGGGCTCATGTCAGGTGTAGTAGAAGCTGTAGCACTCAGCCCCTTTGAAAGAGTACAGAAT
GTGCTTCAAGATGCTCGAAAGCAAGCTTGCTTCCCTAGCACCTTCAGCATTCTCAAGGAATTCAATTCTT
ACGGGCTCTGGGGCAGGCTGTCACTGGGCTATTATCGGGGTTTCTGGCCAGTCCTTGTCAGAAACAGCCT
GGGAAGTGCTCTCTATTTCTCCTTCAAAGATCCTATCCAGGATGGCTTGGCAAGGCAAGGCCTGCCCCAT
TGGGTTCCTGCTTTGGTGTCTGGTAGTGTCAATGGAACAATCACCTGCCTGATTCTGTATCCTCTGATGG
TGCTAGTTGCCAATATGCAGTCTCATATTGGATGGCAGAGAATGCCAAGCCTGTGGGCCTCTGCCCAAGA
TGTGTGGGACACTCGAGGTAGAAAAATCCTGCTGATTTATAGAGGAGGATCCCTGATCGTCCTCAGGTCC
AGTGTGACATGGGGCCTCACTACTGCTATCCATGACTTCTTGCAGAGAAAGGCTCACACCAAGAAAGAGA
TGACAGACTGA

Translation (306 aa):
MEEQDNTAGKKLQHQTRAEAPGTKSWQSQAYTLGAISNFMSTFLTFPIYKVVFRQQIHAVALSEAVKQLW
HEGPQYFYRGIYPPLLSKTLQGTLLFGTYDSLLCFLSPVGPHSLGQRWTAGLMSGVVEAVALSPFERVQN
VLQDARKQACFPSTFSILKEFNSYGLWGRLSLGYYRGFWPVLVRNSLGSALYFSFKDPIQDGLARQGLPH
WVPALVSGSVNGTITCLILYPLMVLVANMQSHIGWQRMPSLWASAQDVWDTRGRKILLIYRGGSLIVLRS
SVTWGLTTAIHDFLQRKAHTKKEMTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH