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Report for CCDS53178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53178.1 Public Mus musculus X Cldn34c1 23 108 98 CCDS HistoryNCBI Gene:73061Re-query CCDS DB by CCDS ID:53178.1Re-query CCDS DB by GeneID:73061See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113348.7 ENSMUSP00000108975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113348.7Link to Ensembl Protein Viewer:ENSMUSP00000108975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113348Re-query CCDS DB by Protein ID:ENSMUSP00000108975
Original member Current member EBI ENSMUST00000169445.2 ENSMUSP00000137081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169445.2Link to Ensembl Protein Viewer:ENSMUSP00000137081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169445Re-query CCDS DB by Protein ID:ENSMUSP00000137081
Original member Current member NCBI NM_028426.2 NP_082702.1 Accepted alive Link to Nucleotide Sequence:NM_028426.2Link to Protein Sequence:NP_082702.1Re-query CCDS DB by Nucleotide ID:NM_028426Re-query CCDS DB by Protein ID:NP_082702Link to BLAST:NP_082702.1

Chromosomal Locations for CCDS 53178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 123117567 123117569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123122898 123122938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123142610 123143270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTTTATCAGCAAGAGAGCTGCAAGAAATAGGACCCTTGCTGGTTTCCACATATTTGATGCCAGCATGG
TCCTGCTAAACAAGTCTGCCAATCACCAAATAAGAGGTTTCACTTTAGCTACAATAGCATGCATAATGTG
CAATACCTCTATGGCCCTTCCAGAATGGCGAATTTGCTACTTGAACAACTCCATGCTTTCCTACCCAAGT
CTGGCTTTTGTGAATATTTGGGAGGCCTACATCTGCCACCACAACCACAACTCAAGCCACCTGAGAGATT
GCCATTACTACACCTGCCATAACAACCTTGTTCCTTTGGATATCCGGGTATCTCAAATTCTGCTCCAGGT
TGCAAATGTTGTTGGTCTGGTTGGGACAGTTTGTTCTGTCTTTGCTCTACAGCAGTTATACACAGAGGAA
CTGCATAAGAATAATGACTACAATCCATTTGTTCTTTCAGCTGTCCTCAATGCTATTGCTAGCACCTTTA
TTTTTCTTGCTGTTATGTGTAATCACCTCTCCGTGCCCAGCAAGGAAGAGGTATCTTTCCTGCAATCTTT
CCAAATGCCAATTTTTTCCAATGCTCAAAGAGCAGGCAGAGCCATGGGATTGGCATACATATCTGCCATA
TTGTTTTTATTAAGTGCTATAATTTTTATTTCTTACTGTCCTTCAATGGAAATCAAAATGTTTCCCCGTG
TCTGA

Translation (234 aa):
MFISKRAARNRTLAGFHIFDASMVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSMLSYPS
LAFVNIWEAYICHHNHNSSHLRDCHYYTCHNNLVPLDIRVSQILLQVANVVGLVGTVCSVFALQQLYTEE
LHKNNDYNPFVLSAVLNAIASTFIFLAVMCNHLSVPSKEEVSFLQSFQMPIFSNAQRAGRAMGLAYISAI
LFLLSAIIFISYCPSMEIKMFPRV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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