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Report for CCDS53160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53160.1 Public Mus musculus X 1700031F05Rik 23 108 98 CCDS HistoryNCBI Gene:73300Re-query CCDS DB by CCDS ID:53160.1Re-query CCDS DB by GeneID:73300See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048061.12 ENSMUSP00000044360.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048061.12Link to Ensembl Protein Viewer:ENSMUSP00000044360.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048061Re-query CCDS DB by Protein ID:ENSMUSP00000044360
Original member Current member EBI ENSMUST00000124592.2 ENSMUSP00000136319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124592.2Link to Ensembl Protein Viewer:ENSMUSP00000136319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124592Re-query CCDS DB by Protein ID:ENSMUSP00000136319
Original member Current member NCBI NM_028496.1 NP_082772.1 Accepted alive Link to Nucleotide Sequence:NM_028496.1Link to Protein Sequence:NP_082772.1Re-query CCDS DB by Nucleotide ID:NM_028496Re-query CCDS DB by Protein ID:NP_082772Link to BLAST:NP_082772.1

Chromosomal Locations for CCDS 53160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102859741 102859757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102860746 102860977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102861142 102861208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102864145 102864281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102864654 102864712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102865015 102865078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGCTGACGCCTTCAGTACTCCTATGAGTGCCCTGCAGTGTCCCCCCAGTTCAGCTGTCATGGATCAGC
ACCTGTATCCCCTTGACCAGCCTGAAGACCTGCTTCACACAGGTCCCCAACAGGGAATCTTGCAAGTGCC
TCTGATGTTGAGCTTGCCCACACCAGTCATCAATATGTCCTGTATTCCGGTGACTCTGAACCTTCAAATG
ACCCCTTCTTTCTCATGGAATCCCAGCCAGCCCATGACTATTCCCTGCCTGTTCCCTAATATGATCATGC
AGCCCAGTACCAGCACTGCCGCCCCTGTCAAGCTGGCACAGGTCCTGGACTCCAACATCTCTTCCCAGCA
CCCTACCACTGCTAACCAGGTTCCTGTCATCTGGGCCCAGAATAACACGTTCAACCAGGTCCCTGAAGTC
TACACCCAGGGCCCAGTCGTCTCCACCCAGGGCAGCTCATCTGCTGAGGAACACAGGCAGAAGGTCATGG
ATGCTGCCGAAGCTCTCCTGATTCTGCATAACTCCCGGGAGGCACTGCAAGAGACTAGCACCACCCCAGG
TCCTGATGGAGAGTGA

Translation (191 aa):
MADAFSTPMSALQCPPSSAVMDQHLYPLDQPEDLLHTGPQQGILQVPLMLSLPTPVINMSCIPVTLNLQM
TPSFSWNPSQPMTIPCLFPNMIMQPSTSTAAPVKLAQVLDSNISSQHPTTANQVPVIWAQNNTFNQVPEV
YTQGPVVSTQGSSSAEEHRQKVMDAAEALLILHNSREALQETSTTPGPDGE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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