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Report for CCDS5301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5301.1 Public Homo sapiens 6 TTLL2 24 110 108 CCDS HistoryNCBI Gene:83887Re-query CCDS DB by CCDS ID:5301.1Re-query CCDS DB by GeneID:83887See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239587.10 ENSP00000239587.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239587.10Link to Ensembl Protein Viewer:ENSP00000239587.5Re-query CCDS DB by Nucleotide ID:ENST00000239587Re-query CCDS DB by Protein ID:ENSP00000239587
Original member Current member EBI ENST00000515138.1 ENSP00000424130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515138.1Link to Ensembl Protein Viewer:ENSP00000424130.1Re-query CCDS DB by Nucleotide ID:ENST00000515138Re-query CCDS DB by Protein ID:ENSP00000424130
Original member Current member NCBI NM_031949.5 NP_114155.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031949.5Link to Protein Sequence:NP_114155.4Re-query CCDS DB by Nucleotide ID:NM_031949Re-query CCDS DB by Protein ID:NP_114155Link to BLAST:NP_114155.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114155.4 592 Q9BWV7 592 100% 0 0

Chromosomal Locations for CCDS 5301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 167325174 167325220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 167338647 167338803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 167340105 167341679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGAGAGGGCGGGACCTGTGTTCCTCCACACAAAGCCAGGCGCTGGGATCTTTGAGAACCACCACCCCAG
CCTTTACCCTTAACATTCCATCCGAGGCAAACCACACTGAGCAGCCGCCTGCAGGCCTGGGAGCAAGGCT
ACAGGAAGCAGGTGTTTCCATCCCTCCCAGGCGAGGCCGCCCAACACCAACACTGGAGAAGAAGAAAAAA
CCTCATTTGATGGCGGAAGATGAACCTTCAGGGGCCCTCTTGAAGCCGCTGGTTTTTCGCGTTGACGAGA
CCACCCCGGCTGTGGTGCAAAGCGTCCTCCTGGAGAGGGGGTGGAATAAGTTTGATAAGCAGGAGCAGAA
CGCGGAGGACTGGAACCTGTACTGGAGGACATCCTCTTTCCGAATGACCGAACACAACAGTGTTAAACCG
TGGCAGCAGCTAAACCACCACCCTGGAACCACCAAGCTTACCAGGAAAGACTGTTTGGCCAAACACCTGA
AGCACATGAGGAGGATGTATGGCACTTCCCTGTACCAGTTCATCCCCCTGACGTTCGTCATGCCCAATGA
CTATACCAAGTTCGTGGCTGAATACTTTCAGGAGAGGCAGATGCTGGGCACCAAGCATAGCTATTGGATT
TGCAAGCCTGCTGAGTTATCTCGTGGGAGGGGGATACTAATTTTCAGTGACTTTAAAGACTTCATCTTTG
ATGATATGTACATAGTGCAGAAATATATCTCCAATCCTTTACTTATTGGCAGATATAAATGTGATCTCCG
CATCTATGTTTGTGTTACTGGCTTTAAGCCTTTGACCATTTATGTTTATCAGGAAGGGTTGGTTCGGTTT
GCCACGGAAAAGTTTGACCTCAGTAATTTGCAAAACAATTATGCCCATTTGACCAACAGCAGCATCAATA
AATCCGGGGCCTCTTATGAGAAGATCAAAGAAGTGATTGGTCATGGTTGTAAATGGACGCTCAGCAGATT
TTTTTCCTACCTTCGTAGCTGGGATGTGGACGATCTGCTTTTGTGGAAGAAAATCCACCGCATGGTTATT
CTCACCATTCTCGCCATTGCACCATCTGTCCCCTTTGCTGCCAATTGCTTTGAGCTCTTTGGGTTTGATA
TTTTGATTGATGACAACTTGAAACCATGGCTTTTAGAGGTCAACTACAGCCCAGCCTTGACCTTGGATTG
TTCAACAGATGTGTTGGTGAAGAGAAAACTTGTCCATGATATTATTGACCTGATTTACTTAAATGGTCTA
AGAAATGAGGGGAGAGAAGCCAGTAATGCCACACATGGAAATTCCAACATCGACGCTGCAAAAAGTGACA
GAGGTGGGCTTGATGCTCCTGACTGTCTTCCTTATGATTCTCTTTCGTTCACAAGCAGAATGTACAACGA
GGATGACTCTGTGGTGGAGAAAGCTGTGAGTGTGCGTCCTGAAGCTGCACCTGCCTCCCAGCTGGAAGGA
GAGATGAGTGGGCAGGATTTTCATCTGTCAACAAGGGAGATGCCACAAAGCAAGCCCAAGTTACGGAGCA
GGCACACGCCTCACAAGACACTCATGCCCTACGCGTCCCTCTTCCAGTCGCACTCCTGCAAGACCAAGAC
CTCCCCGTGTGTCCTGTCAGACCGTGGCAAAGCTCCAGATCCCCAAGCAGGCAACTTTGTTCTTGTTTTT
CCTTTCAATGAAGCAACTCTCGGAGCTTCCAGGAATGGATTAAATGTCAAAAGAATAATCCAAGAGCTCC
AGAAACTAATGAATAAGCAACATTCCTAA

Translation (592 aa):
MRGRDLCSSTQSQALGSLRTTTPAFTLNIPSEANHTEQPPAGLGARLQEAGVSIPPRRGRPTPTLEKKKK
PHLMAEDEPSGALLKPLVFRVDETTPAVVQSVLLERGWNKFDKQEQNAEDWNLYWRTSSFRMTEHNSVKP
WQQLNHHPGTTKLTRKDCLAKHLKHMRRMYGTSLYQFIPLTFVMPNDYTKFVAEYFQERQMLGTKHSYWI
CKPAELSRGRGILIFSDFKDFIFDDMYIVQKYISNPLLIGRYKCDLRIYVCVTGFKPLTIYVYQEGLVRF
ATEKFDLSNLQNNYAHLTNSSINKSGASYEKIKEVIGHGCKWTLSRFFSYLRSWDVDDLLLWKKIHRMVI
LTILAIAPSVPFAANCFELFGFDILIDDNLKPWLLEVNYSPALTLDCSTDVLVKRKLVHDIIDLIYLNGL
RNEGREASNATHGNSNIDAAKSDRGGLDAPDCLPYDSLSFTSRMYNEDDSVVEKAVSVRPEAAPASQLEG
EMSGQDFHLSTREMPQSKPKLRSRHTPHKTLMPYASLFQSHSCKTKTSPCVLSDRGKAPDPQAGNFVLVF
PFNEATLGASRNGLNVKRIIQELQKLMNKQHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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