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Report for CCDS52947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52947.1 Public Mus musculus 9 Pdcd6ip 23 108 98 CCDS HistoryNCBI Gene:18571Re-query CCDS DB by CCDS ID:52947.1Re-query CCDS DB by GeneID:18571See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111861.3 ENSMUSP00000107492.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111861.3Link to Ensembl Protein Viewer:ENSMUSP00000107492.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111861Re-query CCDS DB by Protein ID:ENSMUSP00000107492
Original member Current member NCBI NM_001164677.1 NP_001158149.1 Accepted alive Link to Nucleotide Sequence:NM_001164677.1Link to Protein Sequence:NP_001158149.1Re-query CCDS DB by Nucleotide ID:NM_001164677Re-query CCDS DB by Protein ID:NP_001158149Link to BLAST:NP_001158149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158149.1 874 Q9WU78-3 874 100% 0 0

Chromosomal Locations for CCDS 52947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113654933 113655107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113656017 113656207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113657086 113657209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113659831 113659925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113660946 113661080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113662269 113662517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113671757 113671926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113672703 113672814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113674325 113674502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113678306 113678429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113679953 113680175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113685307 113685438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113687625 113687725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113689575 113689728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113691453 113691580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113697506 113697575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113699969 113700023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113707899 113708107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGGCGTCGTTCATCTGGGTGCAGCTGAAGAAGACCTCGGAGGTGGACCTGGCCAAGCCGCTGGTGAAGT
TCATCCAGCAGACGTACCCGAGCGGCGGCGAGGAGCAGGCCCAGTACTGCCGTGCGGCCGAGGAGCTCAG
CAAACTGCGGCGCTCGGCGCTCGGTCGCCCGCTGGACAAGCATGAGGGCGCCCTGGAGACGTTGCTGAGG
TATTATGATCAGATTTGTTCCATTGAACCCAAGTTCCCATTTTCTGAAAATCAGATCTGCTTGACGTTCA
CGTGGAAGGATGCTTTTGATAAAGGTTCCCTTTTTGGAGGGTCTGTAAAATTGGCTCTTGCAAGCTTAGG
ATATGAAAAGAGCTGTGTGTTGTTCAATTGTGCTGCCTTAGCTAGCCAGATTGCAGCAGAGCAGAACCTG
GATAATGATGAAGGATTGAAAACCGCTGCTAAGCAGTACCAGTTTGCTAGTGGTGCCTTTTTACATATTA
AAGACACAGTGTTATCTGCCTTAAGTCGAGAGCCTACTGTGGACATATCTCCAGATACTGTTGGAACTCT
CAGTCTTATTATGCTGGCTCAAGCTCAAGAAGTATTTTTCTTAAAAGCCACAAGAGATAAGATGAAAGAT
GCCATCATAGCTAAGCTGGCAAATCAGGCTGCGGATTACTTTGGCGATGCTTTCAAGCAGTGTCAGTACA
AGGACACGCTCCCCAAGTATTTTTATTTCCAGGAGGTATTCCCCACCCTGGCTGCAAAGCAGTGCATCAT
GCAGGCCAATGCTGAGTACCACCAGTCCATCCTGGCCAAGCAGCAGAAGAAGTTTGGGGAAGAGATCGCA
AGGTTGCAGCACGCAGCAGAACTGATCAAGAATGTGGCCTCTCGCTATGATGAGTATGTCAATGTGAAGG
ATTTTTCTGACAAAATCAACCGTGCCCTTACTGCAGCAAAGAAGGATAATGATTTTATTTATCATGACCG
TGTTCCGGACCTTAAGGATCTGGATCCTATCGGCAAAGCCACACTTGTGAAGCCCACCCCAGTCAATGTA
CCTGTCAGCCAGAAGTTCACGGATTTGTTTGAGAAGATGGTCCCTGTGTCTGTGCAGCAGTCCCTGGCTG
TGTTTAGTCAGAGGAAAGCTGACTTGGTCAACAGATCAATCGCTCAGATGAGAGAAGCTACGACTTTGGC
AAATGGAGTATTGGCTTCCCTTAACCTTCCAGCAGCAATTGAAGATGTGTCTGGAGACACTGTACCTCAG
TCTATACTTACCAAGTCTACATCTGTAGTTGAACAGGGAGGCATCCAGACTGTCGACCAGCTGATAAAAG
AGCTACCTGAGCTGCTGCAAAGAAATAGAGAAATATTAGAGGAGTCGCTAAGATTGTTGGATGAAGAAGA
AGCAACTGACAATGATTTAAGAGCAAAATTCAAGGACCGCTGGCAAAGGACTCCATCCAATGACCTGTAC
AAGCCTTTACGAGCAGAGGGAGCCAAATTCAGAGCCGTTTTAGATAAAGCTGTGCAAGCGGATGGACAGG
TGAAGGAGCGCTACCAGTCCCATCGAGACACCATCGCACTTCTGTGTAAGCCGGAGCCAGAGCTGAATGC
TGCCATCCCCTCTGCTAACCCAGCAAAGACCATGCAGGGCAGCGAGGTTGTAAGTGTCTTAAAGTCCTTA
TTATCAAATCTTGATGAAATCAAGAAGGAAAGAGAGAGTCTTGAGAATGACCTGAAGTCAGTGAATTTTG
ACATGACAAGCAAGTTTTTGACAGCTCTGGCCCAAGATGGCGTGATAAATGAGGAGGCTCTCTCTGTCAC
TGAGCTGGATCGGATCTATGGCGGTCTAACAAGTAAAGTTCAAGAGTCTCTGAAGAAACAAGAGGGACTT
CTAAAAAATATACAGGTCTCACACCAAGAATTCTCCAAAATGAAGCAATCTAACAACGAGGCTAACTTGA
GAGAAGAAGTTCTGAAGAACCTAGCAACTGCGTATGACAACTTTGTTGAGCTTGTAGCTAACTTGAAGGA
GGGCACAAAGTTTTACAATGAGCTGACTGAGATCCTGGTCAGGTTCCAGAACAAATGCAGTGACATAGTG
TTTGCACGGAAGACAGAAAGAGACGAGCTCTTGAAGGATCTGCAGCAGAGCATTGCCAGAGAGCCCAGCG
CTCCTTCAATCCCTCCTCCAGCCTATCAGTCCTCCCCAGCAGCGGGGCATGCAGCAGCGCCTCCAACTCC
AGCCCCAAGAACCATGCCGCCTGCTAAGCCCCAGCCTCCAGCCCGGCCTCCACCTCCTGTGCTTCCTGCA
AACCGAGTTCCTCCTGCTTCTGCTGCTGCTGCCCCTGCAGGCGTGGGGACGGCTTCAGCAGCGCCGCCAC
AGACCCCTGGCTCTGCTCCCCCGCCACAGGCTCAGGGACCACCATACCCTACCTATCCAGGATATCCCGG
GTATTGCCAAATGCCCATGCCCATGGGCTACAACCCCTACGCATATGGCCAGTACAATATGCCGTACCCA
CCGGTGTATCACCAGAGCCCCGGACAGGCTCCATACCCAGGACCCCAGCAGCCTACCTACCCCTTCCCTC
AGCCCCCGCAGCAGTCCTACTATCCACAGCAGTAA

Translation (874 aa):
MASFIWVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLR
YYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNL
DNDEGLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD
AIIAKLANQAADYFGDAFKQCQYKDTLPKYFYFQEVFPTLAAKQCIMQANAEYHQSILAKQQKKFGEEIA
RLQHAAELIKNVASRYDEYVNVKDFSDKINRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKPTPVNV
PVSQKFTDLFEKMVPVSVQQSLAVFSQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQ
SILTKSTSVVEQGGIQTVDQLIKELPELLQRNREILEESLRLLDEEEATDNDLRAKFKDRWQRTPSNDLY
KPLRAEGAKFRAVLDKAVQADGQVKERYQSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVSVLKSL
LSNLDEIKKERESLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRIYGGLTSKVQESLKKQEGL
LKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIV
FARKTERDELLKDLQQSIAREPSAPSIPPPAYQSSPAAGHAAAPPTPAPRTMPPAKPQPPARPPPPVLPA
NRVPPASAAAAPAGVGTASAAPPQTPGSAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYP
PVYHQSPGQAPYPGPQQPTYPFPQPPQQSYYPQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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