NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52946.1 Public Mus musculus 9 Arpp21 23 108 98 CCDS HistoryNCBI Gene:74100Re-query CCDS DB by CCDS ID:52946.1Re-query CCDS DB by GeneID:74100See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161412.7 ENSMUSP00000125282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161412.7Link to Ensembl Protein Viewer:ENSMUSP00000125282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161412Re-query CCDS DB by Protein ID:ENSMUSP00000125282
Original member Current member NCBI NM_001177623.1 NP_001171094.1 Accepted alive Link to Nucleotide Sequence:NM_001177623.1Link to Protein Sequence:NP_001171094.1Re-query CCDS DB by Nucleotide ID:NM_001177623Re-query CCDS DB by Protein ID:NP_001171094Link to BLAST:NP_001171094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171094.1 248 Q9DCB4-8 248 100% 0 0

Chromosomal Locations for CCDS 52946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112161570 112161633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176095 112176235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112176934 112176993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112177658 112177736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112179028 112179172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112183495 112183584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112184269 112184310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112185609 112185734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTCTGAGCAAGGAGGACTGACTCCGACCATACTGGAAGAAGGGCAGACGGAGCCAGAGTCTGCCCCAG
AAAATGGCATCCTCAAGTCAGAAAGTCTGGATGAGGAGGAGAAGCTGGAACTGCAGCGGCGACTGGCGGC
TCAGAACCAAGAGAGGAGAAAATCCAAGTCAGGAGCAGGCAAAGGGAAGCTGACCAGAAGTCTTGCTGTC
TGTGAAGAGTCTTCAGCTAGATCTGGAGGGGAAAGTCACCAGGATCAGGAATCAATTCACTTACAGCTTT
CCAGTTTCCCCAGCCTGCAAGAGGAGGATAAATCTAGGAAGGATGATTCTGAGAGAGAAAAAGAAAAGGA
TAAGAACAGAGAGAAACTCTCTGAGAGACCCAAGATCAGAATGTTATCAAAAGATTGCAGCCAAGAATAC
ACAGATTCTACAGGCATAGACTTACATGGGTTTCTAATTAACACGCTGAAGAACAATTCCAGGGACAGGA
TGATACTCTTGAAAATGGAGCAGGAAATGATTGATTTCATTGCTGACAGCAATAACCACTATAAAAAGTT
CCCCCAGATGTCATCCTATCAAAGGATGCTGGTCCATCGGGTGGCAGCGTACTTTGGATTGGACCACAAC
GTGGATCAAACTGGAAAATCTGTCATCATCAACAAGACCAGCAGCACCAGGATAGTCCAAGATACTGGCT
GGAGATGCAAGCATGCTCACCGTACAGGAGCAGTGTGCACCAACTAG

Translation (248 aa):
MSEQGGLTPTILEEGQTEPESAPENGILKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAV
CEESSARSGGESHQDQESIHLQLSSFPSLQEEDKSRKDDSEREKEKDKNREKLSERPKIRMLSKDCSQEY
TDSTGIDLHGFLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHN
VDQTGKSVIINKTSSTRIVQDTGWRCKHAHRTGAVCTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH