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Report for CCDS52922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52922.1 Public Mus musculus 9 Rnf123 23 108 98 CCDS HistoryNCBI Gene:84585Re-query CCDS DB by CCDS ID:52922.1Re-query CCDS DB by GeneID:84585See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160249.7 ENSMUSP00000124548.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160249.7Link to Ensembl Protein Viewer:ENSMUSP00000124548.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160249Re-query CCDS DB by Protein ID:ENSMUSP00000124548
Original member Current member EBI ENSMUST00000178267.7 ENSMUSP00000136953.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178267.7Link to Ensembl Protein Viewer:ENSMUSP00000136953.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178267Re-query CCDS DB by Protein ID:ENSMUSP00000136953
Original member NCBI NM_032543.2 NP_115932.1 Updated not alive Link to Nucleotide Sequence:NM_032543.2Link to Protein Sequence:NP_115932.1Re-query CCDS DB by Nucleotide ID:NM_032543Re-query CCDS DB by Protein ID:NP_115932
Current member NCBI NM_032543.3 NP_115932.1 Accepted alive Link to Nucleotide Sequence:NM_032543.3Link to Protein Sequence:NP_115932.1Re-query CCDS DB by Nucleotide ID:NM_032543Re-query CCDS DB by Protein ID:NP_115932Link to BLAST:NP_115932.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115932.1 1314 Q5XPI3-1 1314 100% 0 0

Chromosomal Locations for CCDS 52922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108051840 108051960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108052035 108052120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108052214 108052308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108052445 108052587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108056037 108056121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108056357 108056432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108056521 108056709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108056816 108056955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108058163 108058247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108058336 108058423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108058509 108058596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108058783 108058857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108059663 108059840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108061754 108061861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108062562 108062645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108062871 108063016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108063483 108063681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108063921 108064027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108065686 108065787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108066285 108066405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108066623 108066694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108066855 108066916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108067095 108067194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108067396 108067513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108068122 108068195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108068267 108068359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108068476 108068601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108068991 108069095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108069172 108069286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108069676 108069801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108069948 108070015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108070217 108070303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108070545 108070630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108070726 108070780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108071151 108071245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108071378 108071457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108077349 108077433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108077722 108077803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGGCGTCCAAGGGGACTGGCATGTCGTTCTCCCGAAAGAGCTATAGGCTGACCTCAGATGCTGAGAAGT
CCAGGGTCACAGGCATCGTGCAAGAGAAACTACTGAGCGACTATCTGTACCGCATCTTTTCCCCTCCTGA
CCGTGGACCCGCCGCAGCCACCAGCAGGAAACCGCTAAACTTCCATAACCTGCCTGAGCACGTGGACCAG
CTGCTACAGGTGGACAGTGAAGACAACGAGAGCCAGGGACAAGTTGAAGGTCGACTTGGCCCATCTACTG
TGGTCCTAGACCACACAGGAGGCTTTGAGGGGCTTCTCCTTGTGGATGATGACCTCCTGGGGGTGATTGG
ACACAGCAACTTTGGCACTATCCGTTCTACCACATGTGTGTACAAAGGGAAGTGGGTCTACGAGGTGCTC
ATCTCCTCCCAGGGCCTCATGCAGATCGGCTGGTGCACCATCAACTGCCGCTTTAATCAGGAGGAAGGGG
TTGGAGACACACATAACTCCTATGCCTATGACGGCAACCGAGTGCGCAAGTGGAATGTTACCACCACGAA
TTATGGCAAGGCGTGGGCTGCGGGGGACATTGTCAGCTGCCTAATTGATCTGGATGATGGGACTCTGTCC
TTCTGCCTGAATGGCGTGTCACTGGGCACTGCCTTCGAGAACCTTTCCAGGGGCCTAGGAATGGCGTACT
TCCCAGCCATCAGCCTGTCATTCAAGGAGTCTGTGGCATTCAACTTTGGCAGCCGTCCTTTGCGCTACCC
AGTTGCGGGCTTCCGGCCCCTGCAGGACCCTCCGTTTGCTGACCTGGTCCGGGCACAGAGGTTGCTGGGC
TGCTTCCAGGCAGTGCTAAGTGTGGAGCTGGACCCTGTGGAAGGGCGGCTGGTGGAGACGGAGAGCTCTG
AGTGGCAGCTGCAAGGGCAGCCCACTGTCCTCCTCACGCTGGCCCACATCTTCCATCACTTTGCACCACT
GCTGCGCAAGGTATACCTGGTGGAGGCTGTGCTAATGAGCTTCCTGCTGGGCGTTGTGGAGAAGGGCACA
CCAGAGCAGGCGCAGTCTGTGGTACACCAGATCTTGGACCTCTTGTGGCTCTTCATGGAGGACTATGAGG
TACAGGATTGCCTGAAGCAGTTGATGATGTCACTTCTACGTCTCTACCGATTCTCGCCTATTGTCCCAGA
CCTGGGTCTACAGATCCACTACCTGCGCCTCACTATGTCCATCCTGAGACACGAGAAGTCCCGCAAGTTC
CTGCTTAGCAATGTCCTTTTTGACATGCTCCGGTCCGTGGTCTTCTTTTATATTAAGAGTCCCCTGCGTG
TGGAGGAAGCTGGCCTGAAGGAACTCATTCCCACCACCTGGTGGCCCCATCGCTCCAGCAGGGAGAGCAG
AGACGGTAAGGAAGCAAGGGAGGAGACCACCGAAGAGCGGCAGCGGAGGCGAGCCTATGAGCGTGGCTGC
CAAAGACTCAAGAAACGCATTGAAGTGGTGGAAGAACTGCAGGTCCAGATCCTGAAGCTGCTGTTGGACA
ATAAAGATGACAATGGGGGTGAAGCTTCTAGGTACATCTTTCTGACAAAATTCCGAAAGTTCCTGCAGGA
GAATGCCAGCGGCCGGGGGAACACACCCGTGCTCTGCCCCCCTGAGTACATGGTCTGCTTCCTACACCGG
CTGGTGTCTGCCTTGCGCTTCTATTGGGATGAATACAAAGCTTCCAACCCCCGTGCTTCCTTCAGTGAGG
AGGCTTACATCCCGCCCCAGATCTTCTATAATGGCAAGGTGGACTACTTTGACCTTCAGCGCCTTGGGGG
CCTCCTCTCACACCTTCGAAAGACCCTTAAAGATGACCTTGCTTCCAAAGCCAACATCGTGATCGACCCC
CTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCTGCCCCCTCAGCGGCCCAGC
GTCCGATGCAAGCCCTGGCCATCGGAGGGGCACTGCCCCTGCCCCGGCCAGGCTGGCTCAGTTCTCCAAC
CCTGGGCAGAGCCAACCGCTTCCTCAGCACGGCAGCTGTGAGCCTCATGACCCCACGGCGGCTTCTGAGC
ACCATGGAGAAAGTCAAAGTTCGCTCACTGAATGTGGAACAGAGGACCCGTGAGGACATTGAGGGCAGCC
ACTGGAATGAGGGCCTGCTGTTGGGGAGGCCCCCTGAAGAGCCTGAGCAGCCGCTTACCGAGAACTCGCT
GTTGGAAGTCCTGGATGGCACAGTCATGATGTATAACCTCAGCGTTCACCAGCAGCTGGGCAAGATGGTG
GGTGTGTCTGATGATGTCAACGAGTATGCAATGGCCCTAAGAGACACAGAGGACAAGCTCCGTCGGTGCC
CTAAGAGGAGGAAGGATATCCTTGCAGAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTGGACCA
CCTGAGCCGCAGGCTTGCCTGGGTCCACGCCACAGTCTACTCACAGGAGAAAATGCTGGATATCTACTGG
TTACTGCGTGTCTGCCTACGGACCATTGAGCATGGGGACCGCACGGGGTCTCTCTTTGCCTTCATGCCTG
AGTTCTACCTAAGTGTGGCTATCAACAGCTACAGTGCCCTGAAGAACTATTTTGGCCCTGTGCACAGCAT
GGAGGAACTCCCAGGCTATGAAGAGACCCTGACACGCTTAGCTGCCATCCTCGCCAAACACTTTGCTGAC
CCTCGAATAGTAGGCACTGATATTCGAGACTCACTGATGCAGGCCCTGGCCAGCTATGTGTGCTACCCAC
ACTCCCTGCGGGCTGTGGAACGGATTCCTGAGGAACAGCGCATCGCCATGGTGAGGAACCTTTTGGCACC
CTATGAGCAACGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTTTGGAGGGGCTGTGGGTTTGGG
TACCGCTATACACGGCTGCCACATCTGCTGAAAACCAAGCCAGAGGATGCCAATTTGCCCAGCCTCCAAA
AGCCCTGCCCTTCGACCTTGCTACAGCAGCACATGGCGGACCTGCTGCGACAAGGGTCTGATGTGGCACC
GAGCTTCCTCAACAGTGTCCTTAACCAGCTCAACTGGGCCTTCTCTGAGTTCATCGGCATGATCCAGGAG
ATTCAACAGGCTGCTGAACGCCTGGAGCGGAACTTTGTGGACAGCCGACAGCTCAAGGTCTGTGCCACCT
GCTTTGACCTGTCGGTCAGCTTGTTGCGCGTCTTGGAAATGACCATCACGCTGGTACCTGAAATATTCCT
TGACTGGTCCCGCCCTACCTCTGAGATGCTGCTTCGGCGTCTGGCACAGCTGCTGAACCAGGTGCTGAAC
CGGGTGACAGCTGAGAGGAACCTGTTTGACCGTGTAGTTACCCTACGGCTACCTGGGCTGGAGAGTGTGG
ACCACTACCCTATCCTGGTGGCAGTGACTGGCATCCTGGTACGCCTCCTGGTGCACGGCCCAACCTCAGA
GACAGAGCAAGCCACCTCTGTGCTCCTGGCTGATCCCTGCTTCCAGCTTCGTTCCATATGCTATCTCCTG
GGGCAGCCAGAGCCCCTAGCACCTGGCACTACCTTGCCTGCCCCTGACCGGAAACGCTTCTCTCTACAGA
GTTATACAGATTATATCAGCGCTGAGGAGCTGGCCCAGGTGGAACAGATGCTGGCTCACCTGACCGCTGC
ATCTGCCCAGGCGGCCGCCGCCTCCCTGCCCACCAATGAAGAGGACCTCTGCCCAATCTGCTACGCCCAC
CCCATCTCTGCTGTGTTCCAGCCTTGTGGTCACAAATCCTGCAAAGCCTGCATCAACCAGCACCTGATGA
ACAACAAGGACTGCTTCTTCTGCAAAGCCACCATTGTATCTGTAGAGGACTGGGACAAGGCAGCCAACAC
AAGCGCCATGTCCTCAGCTGCCTAG

Translation (1314 aa):
MASKGTGMSFSRKSYRLTSDAEKSRVTGIVQEKLLSDYLYRIFSPPDRGPAAATSRKPLNFHNLPEHVDQ
LLQVDSEDNESQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSNFGTIRSTTCVYKGKWVYEVL
ISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRKWNVTTTNYGKAWAAGDIVSCLIDLDDGTLS
FCLNGVSLGTAFENLSRGLGMAYFPAISLSFKESVAFNFGSRPLRYPVAGFRPLQDPPFADLVRAQRLLG
CFQAVLSVELDPVEGRLVETESSEWQLQGQPTVLLTLAHIFHHFAPLLRKVYLVEAVLMSFLLGVVEKGT
PEQAQSVVHQILDLLWLFMEDYEVQDCLKQLMMSLLRLYRFSPIVPDLGLQIHYLRLTMSILRHEKSRKF
LLSNVLFDMLRSVVFFYIKSPLRVEEAGLKELIPTTWWPHRSSRESRDGKEAREETTEERQRRRAYERGC
QRLKKRIEVVEELQVQILKLLLDNKDDNGGEASRYIFLTKFRKFLQENASGRGNTPVLCPPEYMVCFLHR
LVSALRFYWDEYKASNPRASFSEEAYIPPQIFYNGKVDYFDLQRLGGLLSHLRKTLKDDLASKANIVIDP
LELQAATMDDLDEDEEPAPSAAQRPMQALAIGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMTPRRLLS
TMEKVKVRSLNVEQRTREDIEGSHWNEGLLLGRPPEEPEQPLTENSLLEVLDGTVMMYNLSVHQQLGKMV
GVSDDVNEYAMALRDTEDKLRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMLDIYW
LLRVCLRTIEHGDRTGSLFAFMPEFYLSVAINSYSALKNYFGPVHSMEELPGYEETLTRLAAILAKHFAD
PRIVGTDIRDSLMQALASYVCYPHSLRAVERIPEEQRIAMVRNLLAPYEQRPWAQTNWILVRLWRGCGFG
YRYTRLPHLLKTKPEDANLPSLQKPCPSTLLQQHMADLLRQGSDVAPSFLNSVLNQLNWAFSEFIGMIQE
IQQAAERLERNFVDSRQLKVCATCFDLSVSLLRVLEMTITLVPEIFLDWSRPTSEMLLRRLAQLLNQVLN
RVTAERNLFDRVVTLRLPGLESVDHYPILVAVTGILVRLLVHGPTSETEQATSVLLADPCFQLRSICYLL
GQPEPLAPGTTLPAPDRKRFSLQSYTDYISAEELAQVEQMLAHLTAASAQAAAASLPTNEEDLCPICYAH
PISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAANTSAMSSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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