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Report for CCDS52899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52899.1 Public Mus musculus 9 Ppp2r3a 23 108 98 CCDS HistoryNCBI Gene:235542Re-query CCDS DB by CCDS ID:52899.1Re-query CCDS DB by GeneID:235542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066773.8 ENSMUSP00000069688.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066773.8Link to Ensembl Protein Viewer:ENSMUSP00000069688.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066773Re-query CCDS DB by Protein ID:ENSMUSP00000069688
Original member Current member NCBI NM_172144.3 NP_742156.2 Accepted alive Link to Nucleotide Sequence:NM_172144.3Link to Protein Sequence:NP_742156.2Re-query CCDS DB by Nucleotide ID:NM_172144Re-query CCDS DB by Protein ID:NP_742156Link to BLAST:NP_742156.2

Chromosomal Locations for CCDS 52899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 101107843 101107969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101125023 101125129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101126309 101126427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101126897 101127072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101144311 101144400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101145475 101145523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101148582 101148738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101153788 101153874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101175328 101175402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101180335 101180437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101185933 101186036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101194159 101194425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101198631 101198762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGATGATCAAGGAAACGTCCTTGCGAAGGGACCCGGATTTAAGGGGAGAGTTAGCTTTCCTAGCAAGGG
GCTGCGATTTTGTTCTCCCATCACGGTTTAAGAAGAGGCTGAAGTCATTTCAGCAGACACAGATTCAAAA
TAAACCAGAAAAGAAACCTGCAACATCATTTCCACCTGCAGCCACCCTTCCAAGTAGTCCCCAGCCGGCC
TCCCCTGTTCCTTGTGTGAGTGATGTCGTGAATACACCGTTGTCCATAAACATTCCACAGTTCTATTTCC
CTGAAGGACTCCCAGACACCTGCAGTAACCATGAACAGATCCTAAGCAGAATTGAAACTGCTTTCAAGGA
TATTGAAGATCAGAAAGCAGATATTCATGAAATGGGGAGAATTGCAAAGGTCTGTGGCTGTCCACTCTAT
TGGAAAGCCCCCATGTTCAGGGCTGCAGGAGGAGAGAAGACTGGATTTGTGACAGCACAGTCATTCATTG
CCATGTGGAAAAAGTTGCTAAGTAACCGTCATGACGATGCTGCCAAGTTCATCTGGCTTCTGGCAAAGCC
CAGCTGCAGCTATCTAGAACAAGAGGATTTTATCCCTTTACTTCAGGATGTGGTAGATACCCACCCTGGC
CTCACCTTCCTGAAAGATGCTCCAGAATTCCATTCCCGCTACATCACCACGGTTGTTCAGAGAATATTCT
ACACAGTCAACAGATCTTGGAGTGGAAAAATTACTTCAACAGAGATAAGAAAAAGCAACTTTTTGCAAAC
TCTGGCCCTTTTGGAGGAAGAGGAAGATATAAACCAAATCACAGATTACTTCTCTTATGAACATTTCTAT
GTCATTTATTGTAAATTCTGGGAACTAGATGGTGATCATGACTTGTACATCAGTCAAGCTGATCTGTCTC
GATACAATGACCAGGCTTCATCAAATAGAATTATTGAAAGAATATTTTCTGGAGCAGTAACAAGAGGAAA
AACTGTACAAAAAGAGGGAAGAATGAGCTATGCAGATTTTGTTTGGTTTTTGATTTCTGAGGAAGACAAA
CGGAACCCTACCAGCATTGAGTACTGGTTCCGCTGCATGGATGTGGATGGAGATGGCATACTTTCCATGT
ATGAACTAGAGTACTTCTATGAAGAGCAGTGTGAACGGATGGAAGCCATGGGCATTGAGCCCTTGCCGTT
CCATGATCTGTTGTGCCAGATGCTTGACTTGGTGAAGCCAGCTAGTGATGGCAGAATAACTCTGCGCGAT
CTGAAGAGGTGCAGAATGGCCCACATCTTCTACGACACTTTCTTTAACCTGGAGAAATACTTGGACCATG
AACAAAGAGATCCTTTTGCAGTCCAGAAGGATGTTGAAAATGATGGCCCTGAGCCATCTGACTGGGACAG
ATTTGCGGCTGAGGAGTACGAGGCTCTCGTAACTGAGGAGTCTGCCCAGGTTCAGCTCCAAGAAGGCTCA
TTTGAAGACTATGAATCAGATGAACCTGTATCTCCCTCTGAACTTGGAAACAAGGGCAATAAAATAGTAA
CTTCAAGCCTTTCAGAGAAATGTGGAAAGCTTCAGTCAGTGGATGAAGAGTAG

Translation (530 aa):
MMIKETSLRRDPDLRGELAFLARGCDFVLPSRFKKRLKSFQQTQIQNKPEKKPATSFPPAATLPSSPQPA
SPVPCVSDVVNTPLSINIPQFYFPEGLPDTCSNHEQILSRIETAFKDIEDQKADIHEMGRIAKVCGCPLY
WKAPMFRAAGGEKTGFVTAQSFIAMWKKLLSNRHDDAAKFIWLLAKPSCSYLEQEDFIPLLQDVVDTHPG
LTFLKDAPEFHSRYITTVVQRIFYTVNRSWSGKITSTEIRKSNFLQTLALLEEEEDINQITDYFSYEHFY
VIYCKFWELDGDHDLYISQADLSRYNDQASSNRIIERIFSGAVTRGKTVQKEGRMSYADFVWFLISEEDK
RNPTSIEYWFRCMDVDGDGILSMYELEYFYEEQCERMEAMGIEPLPFHDLLCQMLDLVKPASDGRITLRD
LKRCRMAHIFYDTFFNLEKYLDHEQRDPFAVQKDVENDGPEPSDWDRFAAEEYEALVTEESAQVQLQEGS
FEDYESDEPVSPSELGNKGNKIVTSSLSEKCGKLQSVDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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