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Report for CCDS52884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52884.1 Public Mus musculus 9 Trim43b 23 108 98 CCDS HistoryNCBI Gene:666747Re-query CCDS DB by CCDS ID:52884.1Re-query CCDS DB by GeneID:666747See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167113.7 ENSMUSP00000126594.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167113.7Link to Ensembl Protein Viewer:ENSMUSP00000126594.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167113Re-query CCDS DB by Protein ID:ENSMUSP00000126594
Original member Current member NCBI NM_001170884.1 NP_001164355.1 Accepted alive Link to Nucleotide Sequence:NM_001170884.1Link to Protein Sequence:NP_001164355.1Re-query CCDS DB by Nucleotide ID:NM_001170884Re-query CCDS DB by Protein ID:NP_001164355Link to BLAST:NP_001164355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164355.1 445 P86448 445 100% 0 0

Chromosomal Locations for CCDS 52884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89085244 89085716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89087529 89087629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89088299 89088321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89089361 89089594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89090593 89090688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 89091268 89091678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAATCAGACAATTTACAAGACCCTCAGGAGGAAACACTCACCTGCTCCATCTGCCAGGGTATCTTTA
TGAATCCAGTTTATTTAAAGTGTGGCCATAAGTTCTGCGAGGCATGTCTCTTACTTTTTCAAGAAGACAT
CAAATTTCCTGCCTACTGCCCCATGTGTATGCAACCATTTAACCAGGAATATATAAATGACATTTCTCTG
AAGAAGCAGGTGTCCATTGTCAGAAAGAAAAGGCTCATGGAATATTTGAATTCTGAGGAGCACAAGTGTG
TGACCCACAAGGCGAAAAAGATGATCTTCTGTGATAAGAGCAAGATCCTCCTCTGTCACCTGTGTTCTGA
CTCCCAGGAGCACAGCGGTCACACACACTGTTCCATTGATGTAGCTGTTCAGGAGAAAATGGAGGAACTT
CTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAAAAGAGAGGAGAA
CGACCTTGTGGTGGTTGAAGTCCATGAAGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATG
TCCACCCCTCAGTGAAGAAAGGGATCAACACATAGAGTGTTTGAGACATCAAAGCAACACTACTTTAGAG
GAGCTCAGGAAAAGTGAAGCTACGATAGTCCACGAGAGAAATCAACTAACAGAGGTGTATCGGGAGCTGA
TGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAA
GCTAGCGGCAAAGCTGGACATGCCACAGGGTATGATACCAAGACTCCGTGCCCATTCCATTCCTGGGCTG
ACTGCAAGGCTCAACTCCTTCCGAGTGAAGATTTCCTTTAAACATTCAATCATGTTCGGCTACACCTCAC
TCAGACCTTTTGATATCAGACTTCTCCATGAAAGCACATCTCTGGATTCAGCTGAAACCCATCGTGTTTC
CTGGGGAAAAAAGAGCTTCTCCAGGGGAAAATACTACTGGGAGGTGGATTTGAAGGACTATAGGCGGTGG
ACTGTAGGAGTCTGTAAGGATCCCTGGTTAAGGGGGAGAAGCTATGTGGCGACACCCACAGATCTATTTC
TTGAGTGTTTGAGAAAGGACGATCATTACATTCTCATCACCCGCATAGGAGGTGAACACTATATAGAGAA
GCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTAAGTTTCGTGGATGTAGCCAAG
AGTTCCCTCATACTCAGCTACTCTCCTGGAACTTTCCATTGTGCTGTCAGGCCTTTCTTCTCTGCTGTCT
ACACATAA

Translation (445 aa):
MESDNLQDPQEETLTCSICQGIFMNPVYLKCGHKFCEACLLLFQEDIKFPAYCPMCMQPFNQEYINDISL
KKQVSIVRKKRLMEYLNSEEHKCVTHKAKKMIFCDKSKILLCHLCSDSQEHSGHTHCSIDVAVQEKMEEL
LKHMDSLWRRLKIQQNYVEKERRTTLWWLKSMKLREEVIKRVYGKQCPPLSEERDQHIECLRHQSNTTLE
ELRKSEATIVHERNQLTEVYRELMTMSQRPYQELLVQDLDDLFRRSKLAAKLDMPQGMIPRLRAHSIPGL
TARLNSFRVKISFKHSIMFGYTSLRPFDIRLLHESTSLDSAETHRVSWGKKSFSRGKYYWEVDLKDYRRW
TVGVCKDPWLRGRSYVATPTDLFLECLRKDDHYILITRIGGEHYIEKPVGQVGVFLDCEGGYVSFVDVAK
SSLILSYSPGTFHCAVRPFFSAVYT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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