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Report for CCDS528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
528.1 Public Homo sapiens 1 GPBP1L1 24 110 108 CCDS HistoryNCBI Gene:60313Re-query CCDS DB by CCDS ID:528.1Re-query CCDS DB by GeneID:60313See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290795.7 ENSP00000290795.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290795.7Link to Ensembl Protein Viewer:ENSP00000290795.3Re-query CCDS DB by Nucleotide ID:ENST00000290795Re-query CCDS DB by Protein ID:ENSP00000290795
Original member Current member EBI ENST00000355105.8 ENSP00000347224.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355105.8Link to Ensembl Protein Viewer:ENSP00000347224.3Re-query CCDS DB by Nucleotide ID:ENST00000355105Re-query CCDS DB by Protein ID:ENSP00000347224
Original member Current member NCBI NM_021639.5 NP_067652.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021639.5Link to Protein Sequence:NP_067652.1Re-query CCDS DB by Nucleotide ID:NM_021639Re-query CCDS DB by Protein ID:NP_067652Link to BLAST:NP_067652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067652.1 474 Q9HC44 474 100% 0 0

Chromosomal Locations for CCDS 528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45628256 45628408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45629576 45629678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45630482 45630606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45633489 45633647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45634096 45634236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45640210 45640403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45642427 45642499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45654543 45654829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45655190 45655319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45659028 45659087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGCGCAGCATGATTTTGTTCCTGCTTGGCTAAATTTCTCAACACCACAGTCAGCTAAGTCACCTACTG
CCACCTTCGAAAAACACGGAGAGCACCTACCCAGAGGAGAAGGTAGATTTGGAGTAAGCCGCCGTCGACA
TAATTCCTCTGATGGTTTTTTTAACAATGGTCCCCTACGAACTGCAGGAGATTCTTGGCACCAGCCCTCC
CTGTTCCGCCATGATTCTGTGGACTCTGGTGTCTCTAAGGGAGCATATGCTGGAATCACAGGGAACCCAT
CTGGTTGGCATAGCTCTTCCCGAGGTCATGATGGCATGAGCCAACGTAGTGGAGGTGGCACAGGGAACCA
TCGCCATTGGAATGGCAGCTTCCACTCCCGGAAAGGGTGTGCTTTTCAGGAAAAGCCACCTATGGAGATT
AGGGAAGAAAAGAAAGAAGACAAGGTGGAAAAGTTGCAGTTTGAAGAGGAGGACTTTCCTTCCTTGAATC
CAGAAGCTGGCAAACAGCATCAGCCATGCAGACCTATTGGGACACCTTCTGGAGTATGGGAAAACCCGCC
TAGTGCCAAGCAACCCTCCAAGATGCTAGTTATCAAAAAAGTTTCCAAAGAGGATCCTGCTGCTGCCTTC
TCTGCTGCATTCACCTCACCAGGATCTCACCATGCAAATGGGAACAAATTGTCATCCGTGGTTCCAAGTG
TCTATAAGAACCTGGTTCCTAAGCCTGTACCACCTCCTTCCAAGCCTAATGCATGGAAAGCTAACAGGAT
GGAGCACAAGTCAGGATCCCTTTCCTCTAGCCGGGAGTCTGCTTTTACCAGTCCAATCTCTGTTACCAAA
CCAGTGGTACTGGCTAGTGGTGCAGCTCTGAGTTCTCCCAAAGAGAGTCCCTCCAGCACCACCCCTCCAA
TTGAGATCAGCTCCTCTCGTCTGACCAAGTTGACCCGCCGAACCACCGACAGGAAGAGTGAGTTCCTGAA
AACTCTGAAGGATGACCGGAATGGAGACTTCTCAGAGAATAGAGACTGTGACAAGCTGGAAGATTTGGAG
GACAACAGCACACCTGAACCAAAGGAAAATGGGGAGGAAGGCTGTCATCAAAATGGTCTTGCCCTCCCTG
TAGTGGAAGAAGGGGAGGTTCTCTCACACTCTCTAGAAGCAGAGCACAGGTTATTGAAAGCTATGGGTTG
GCAGGAATATCCTGAAAATGATGAGAATTGCCTTCCCCTCACAGAGGATGAGCTCAAAGAGTTCCACATG
AAGACAGAGCAGCTGAGAAGAAATGGCTTTGGAAAGAATGGCTTCTTGCAGAGCCGCAGTTCCAGTCTGT
TCTCCCCTTGGAGAAGCACTTGCAAAGCAGAGTTTGAGGACTCAGACACCGAAACCAGTAGCAGTGAAAC
ATCAGATGACGATGCCTGGAAGTAG

Translation (474 aa):
MAQHDFVPAWLNFSTPQSAKSPTATFEKHGEHLPRGEGRFGVSRRRHNSSDGFFNNGPLRTAGDSWHQPS
LFRHDSVDSGVSKGAYAGITGNPSGWHSSSRGHDGMSQRSGGGTGNHRHWNGSFHSRKGCAFQEKPPMEI
REEKKEDKVEKLQFEEEDFPSLNPEAGKQHQPCRPIGTPSGVWENPPSAKQPSKMLVIKKVSKEDPAAAF
SAAFTSPGSHHANGNKLSSVVPSVYKNLVPKPVPPPSKPNAWKANRMEHKSGSLSSSRESAFTSPISVTK
PVVLASGAALSSPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDLE
DNSTPEPKENGEEGCHQNGLALPVVEEGEVLSHSLEAEHRLLKAMGWQEYPENDENCLPLTEDELKEFHM
KTEQLRRNGFGKNGFLQSRSSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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