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Report for CCDS52787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52787.1 Public Mus musculus 9 Gm5617 23 108 98 CCDS HistoryNCBI Gene:434402Re-query CCDS DB by CCDS ID:52787.1Re-query CCDS DB by GeneID:434402See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048824.8 ENSMUSP00000040380.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048824.8Link to Ensembl Protein Viewer:ENSMUSP00000040380.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048824Re-query CCDS DB by Protein ID:ENSMUSP00000040380
Original member Current member NCBI NM_001004191.3 NP_001004191.2 Accepted alive Link to Nucleotide Sequence:NM_001004191.3Link to Protein Sequence:NP_001004191.2Re-query CCDS DB by Nucleotide ID:NM_001004191Re-query CCDS DB by Protein ID:NP_001004191Link to BLAST:NP_001004191.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004191.2 117 Q91VN2 117 100% 0 0

Chromosomal Locations for CCDS 52787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48495568 48495921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCCCAGAACTCGGTGTCGCTGTCCGCCGGCGATCAAGCCAACAGGATGGCCCACCGATCCTCCCAAG
GAGATCTCAACCCGTCGGCCATGGCTTGGGCAATGGTCTCCGGAGATAGCTTCCTGGTTACTAGGCTGGA
TCCGAATCAGCCGGGACCTCGGCCACCAGCGCGACCCAGCGTTCGGGCCGACAGACGTCGAGTCCCTGTC
GGTGGCCGCAGCCGGAGCCGAAGCCGCCAAGGCAGATTCTCGCCTTACCCGATCCCAGGCGTCAAGCTCG
ACCTCTTAAGAAGTGTGCTGCAGCAGCGTCTGGTTGCACTGGGAACTGCTCTCGCAACCCGAATCTCAGC
GTAG

Translation (117 aa):
MAQNSVSLSAGDQANRMAHRSSQGDLNPSAMAWAMVSGDSFLVTRLDPNQPGPRPPARPSVRADRRRVPV
GGRSRSRSRQGRFSPYPIPGVKLDLLRSVLQQRLVALGTALATRISA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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