NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52743.1 Public Mus musculus 9 Dpy19l2 23 108 98 CCDS HistoryNCBI Gene:320752Re-query CCDS DB by CCDS ID:52743.1Re-query CCDS DB by GeneID:320752See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133010.3 ENSMUSP00000132092.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133010.3Link to Ensembl Protein Viewer:ENSMUSP00000132092.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133010Re-query CCDS DB by Protein ID:ENSMUSP00000132092
Original member Current member NCBI NM_001166207.1 NP_001159679.1 Accepted alive Link to Nucleotide Sequence:NM_001166207.1Link to Protein Sequence:NP_001159679.1Re-query CCDS DB by Nucleotide ID:NM_001166207Re-query CCDS DB by Protein ID:NP_001159679Link to BLAST:NP_001159679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159679.1 773 P0CW70 773 100% 0 0

Chromosomal Locations for CCDS 52743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 24558037 24558187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24581130 24581255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24582788 24582887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24584476 24584650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24585508 24585627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24587042 24587066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24617441 24617487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24619104 24619175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24628150 24628251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24631199 24631279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24643712 24643771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24645062 24645148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24646302 24646379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24658558 24658657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24660725 24660816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24663115 24663172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24666909 24667002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24669290 24669410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24680673 24680810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24690054 24690141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24691956 24691980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24695782 24696163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGGTGGGGCCGACAAGGAGTAAGCTCAGGGAAGGGAGCTCCGACAGGCCACAATCCTCCTGCACGGGGC
AGGCGAGGAGGAGGTGGAGCGCAGCGACCATGGAGCCCCAGCAGGAGCGAAGCGCGCCCCAGGAGAGAAC
GAAGTGGTCGTTGCTGCAGCATTTCCTCCTAGGCGGCAGGAAACTGCCCTCGGGTGCTCGCAACTACGCG
GCGCGGAGGATCCAAAGTCTGAACGCACAAAATTACTTTCAGCTGGAAGAGGTCGCCAAGCTCCTTCTTC
TTAACCGCTTCCAATTCCTCTTCACTCTCCTGGACCACTTTCGCGAAAAGGTGCAGGCACTGCAGATGCA
TCGGTTCTCCCACAGGACCCTCTTTGGCCTAGCTATCTTTGTGGGGATTTTGCACTGGTTACACTTAATA
ACACTTTTTGAAAATGATCATCATTTTTCTCACCTTTCATCTTTGGAACGGGAGATGACTTTTCGCACAG
AAATGGGACTTTATTATTCCTACTTCAAGACCATTATCGAAGCACCTTCGTTTCTGGAAGGACTGTGGAT
GATCATGAATGACAGGCTCACTGAGTATCCCCTGGTAATCAACACAGTGAAACGCTTCCATCTTTACCCA
GAGGTAGTCATAGCCTACTGGTATCGCACAATCATAGGAATAATGAATTTATTTGGGATAGAAACTAAGA
CATGTTGGAACGTCACCAGAATGGAGCCTCTTAATGAAGTTCAGAGCTGTGAAGGATTGGGAGACCCAGC
TTGCTTTTACATCGGAGTAATTTTTATTTTAAATGGACTAATGATGGGCTTGTTCTTCATATACAGTACA
TACCTGAGTGGGAGTCAGTTAGGAGGTCTGATTACAGTAGCCTGCTACTTTTTCAATCATGGAGAGGCCA
CCCGTGTGATGTGGACACCGCCTCTCCGGGAAAGTTTCTCCTACCCATTCCTTGTACTTCAGATGTACAT
CTTAACTATAATCCTCAGGACCTCCACCGTTCACAAAAAACACTACATGGCTCTCTGCTTCTCCAACGTC
GCTTTTATGCTTCCGTGGCAGTTTGCTCAGTTTATACTTTTTACACAGATAGCCTCATTATTTCCCATGT
ATGTTGTGGGATACATTGAGCCAAGCAAATTTCAGAAGATCATTTATGTCAATATGAGTTCGGTTGCCCT
ATGCTTCATTTTGATGTTTGGGAATTCAATGTACTTAAGTTCATATTATTCCTCATGTTTGTTAGTGACA
TGGGCAATAATGCAAAAGAAAAGCAAAATCCAAAAATTGGGAGGCACTGAACTTCAGTTTTGGCTAATCC
AAGGCTGTTTTTGGTGGTGTGGAACAATTATTTTGAAATTTCTGACATCTAAAATCTGTGGTGTTTCAGA
CCATATTCGCCTGAGTGACCTTATAGCAGCCAGAATACTAAGGTATACAGATTTTGATACCTTAATATAC
ACCTGTGCTCCCGAATTTGACTTCATGGAACAAGCGACTCCGCTGAGATATATAAAAACATTATTGCTTC
CACTTATCCTAGTGATTACTTATCTTATCTTTAAAAAGATTGTTCGTGATATCATGTGTGTCTTATATAC
AAACACTTATGTAAGAAAACAGCTTCTTGACAACGCTGAGTTGATTTTCCACACCTTGCAGTTGCTGGCA
TTCACAGGTCTTGCCATCTTAATCATGCGGTTGAAGCTGTTTCTGACCCCCCACATGTGCATTATGGCTT
CCTTGATCTGCTCACAACGGCTCTTTGGCTGGCTTTTTTGCAGAATTCATTTTGAGAATGTTGTCTTCGG
CATTCTGACAATGATGTCAATACAAGGTTGTGCAAATCTCCATAACCAATGGAGCATAATGGGAGAATTT
ACTAACTTGCCTCAGGAAGAGCTCATACATTGGATCAAACACAGCACCAGGCCAGATGCCGTCTTTGCAG
GTGCCATGCCTACAATGGCAAGCATCAAGCTGTCTACACTGCGTCCAATTGTGAACCACCCACACTATGA
GGACGCAGACTTGAGGGCTCGGACAAAAATAGTTTATTCTGTGTATAGTCGAAAATCTGCAGTAGAAGTG
AGAAATAATCTGTTGAAATTACATGTGAATTATTATGTTCTAGAAGAGGCATGGTGTGTCGTGAGAACAA
AACCTGGTTGCAGCATGCTTGAAATATGGGATGTGGAAGACCCGTCCAACGCAGCTAACCCTCCCCTCTG
CAGTATCCTGCTCAAGGATTCTCGGCCGTACTTTACCACAGTGTTTCAGAATAGTATGTACAGAGTACTG
AAGATTAACTGA

Translation (773 aa):
MVGPTRSKLREGSSDRPQSSCTGQARRRWSAATMEPQQERSAPQERTKWSLLQHFLLGGRKLPSGARNYA
ARRIQSLNAQNYFQLEEVAKLLLLNRFQFLFTLLDHFREKVQALQMHRFSHRTLFGLAIFVGILHWLHLI
TLFENDHHFSHLSSLEREMTFRTEMGLYYSYFKTIIEAPSFLEGLWMIMNDRLTEYPLVINTVKRFHLYP
EVVIAYWYRTIIGIMNLFGIETKTCWNVTRMEPLNEVQSCEGLGDPACFYIGVIFILNGLMMGLFFIYST
YLSGSQLGGLITVACYFFNHGEATRVMWTPPLRESFSYPFLVLQMYILTIILRTSTVHKKHYMALCFSNV
AFMLPWQFAQFILFTQIASLFPMYVVGYIEPSKFQKIIYVNMSSVALCFILMFGNSMYLSSYYSSCLLVT
WAIMQKKSKIQKLGGTELQFWLIQGCFWWCGTIILKFLTSKICGVSDHIRLSDLIAARILRYTDFDTLIY
TCAPEFDFMEQATPLRYIKTLLLPLILVITYLIFKKIVRDIMCVLYTNTYVRKQLLDNAELIFHTLQLLA
FTGLAILIMRLKLFLTPHMCIMASLICSQRLFGWLFCRIHFENVVFGILTMMSIQGCANLHNQWSIMGEF
TNLPQEELIHWIKHSTRPDAVFAGAMPTMASIKLSTLRPIVNHPHYEDADLRARTKIVYSVYSRKSAVEV
RNNLLKLHVNYYVLEEAWCVVRTKPGCSMLEIWDVEDPSNAANPPLCSILLKDSRPYFTTVFQNSMYRVL
KIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH