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Report for CCDS52737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52737.1 Public Mus musculus 9 Smarca4 23 108 98 CCDS HistoryNCBI Gene:20586Re-query CCDS DB by CCDS ID:52737.1Re-query CCDS DB by GeneID:20586See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098948.9 ENSMUSP00000096547.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098948.9Link to Ensembl Protein Viewer:ENSMUSP00000096547.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098948Re-query CCDS DB by Protein ID:ENSMUSP00000096547
Original member Current member NCBI NM_001174078.1 NP_001167549.1 Accepted alive Link to Nucleotide Sequence:NM_001174078.1Link to Protein Sequence:NP_001167549.1Re-query CCDS DB by Nucleotide ID:NM_001174078Re-query CCDS DB by Protein ID:NP_001167549Link to BLAST:NP_001167549.1

Chromosomal Locations for CCDS 52737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21632833 21633054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21634750 21634882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21635536 21635940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21636183 21636281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21637279 21637537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21638714 21638840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21639218 21639391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21640912 21641085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21642425 21642592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21642701 21642751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21647351 21647481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21647618 21647675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21655627 21655748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21658826 21658976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21660708 21660871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21664849 21664915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21665764 21665874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21667166 21667408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21668935 21669048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21669549 21669656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21670484 21670570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21672043 21672089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21673170 21673336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21675067 21675230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21677450 21677677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21678316 21678393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21678929 21679147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21686013 21686275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21699800 21699908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21700036 21700137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21700854 21700986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21701088 21701230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21702936 21702968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4854 nt):
ATGTCTACTCCAGACCCACCCTTGGGTGGGACTCCTCGGCCTGGTCCTTCCCCAGGCCCTGGTCCTTCAC
CTGGTGCAATGCTGGGTCCTAGCCCTGGCCCCTCACCAGGTTCTGCCCACAGCATGATGGGGCCAAGCCC
AGGACCTCCTTCAGCAGGACATCCCATGCCCACCCAGGGGCCTGGAGGGTACCCCCAGGACAACATGCAT
CAGATGCACAAGCCTATGGAGTCCATGCACGAGAAGGGCATGCCTGATGACCCACGATACAACCAGATGA
AAGGGATGGGCATGCGGTCAGGGGCCCACACAGGCATGGCACCTCCACCTAGTCCCATGGACCAGCATTC
TCAAGGTTACCCCTCACCCCTCGGCGGCTCTGAACATGCCTCCAGTCCTGTCCCAGCCAGTGGCCCATCT
TCAGGCCCCCAGATGTCCTCTGGGCCAGGAGGGGCCCCACTAGATGGTTCTGATCCCCAGGCCTTGGGAC
AGCAAAACAGAGGCCCAACCCCATTTAACCAGAACCAGCTGCATCAACTCAGAGCTCAGATAATGGCCTA
CAAGATGTTGGCCAGGGGCCAGCCATTGCCCGACCACCTGCAGATGGCCGTGCAAGGCAAGCGGCCGATG
CCTGGAATGCAGCAACAGATGCCAACACTACCTCCACCCTCAGTGTCCGCCACAGGACCCGGACCTGGAC
CCGGCCCTGGCCCTGGCCCTGGCCCAGGACCAGCCCCTCCAAATTACAGTAGACCCCATGGTATGGGAGG
GCCCAACATGCCTCCCCCAGGACCCTCAGGTGTGCCCCCCGGGATGCCTGGTCAGCCGCCTGGAGGGCCT
CCCAAGCCATGGCCTGAAGGACCCATGGCCAATGCTGCTGCCCCCACAAGCACCCCACAGAAGCTGATTC
CTCCGCAACCAACAGGCCGTCCTTCACCTGCACCTCCTGCTGTCCCGCCTGCTGCCTCACCTGTAATGCC
ACCACAAACACAGTCCCCAGGGCAGCCAGCCCAGCCTGCTCCATTGGTGCCACTGCACCAGAAGCAGAGC
CGAATCACCCCCATCCAGAAGCCCCGAGGCCTTGACCCTGTGGAGATCCTACAAGAGCGGGAGTACAGGC
TTCAGGCTCGAATCGCACACAGAATTCAGGAACTTGAAAACCTCCCTGGGTCCCTGGCTGGGGACCTTCG
AACCAAAGCAACCATCGAACTCAAGGCCCTTAGGTTGCTGAACTTCCAGAGGCAGCTGCGCCAGGAGGTG
GTGGTGTGCATGCGAAGAGACACAGCCCTGGAGACAGCCCTCAATGCCAAGGCCTACAAGCGCAGCAAAC
GTCAGTCACTACGGGAGGCCCGCATCACTGAGAAGTTGGAGAAGCAGCAGAAGATTGAACAGGAGCGCAA
GCGCCGCCAGAAGCACCAGGAGTACCTCAACAGCATTCTGCAGCATGCCAAGGACTTCAGGGAGTATCAC
AGATCAGTCACAGGCAAACTCCAGAAACTCACCAAGGCTGTGGCCACCTACCATGCCAACACTGAGCGGG
AGCAGAAGAAAGAAAATGAGCGCATTGAGAAGGAGCGAATGCGGAGGCTTATGGCTGAAGATGAGGAGGG
CTACCGCAAACTCATTGACCAGAAGAAGGACAAGCGCCTGGCCTACCTTCTGCAGCAGACAGATGAGTAT
GTGGCCAACCTCACAGAGCTGGTGCGGCAGCACAAAGCTGCCCAGGTTGCCAAGGAGAAGAAGAAGAAAA
AGAAAAAGAAGAAGGCAGAAAATGCTGAAGGACAGACACCTGCTATTGGACCAGATGGTGAGCCTCTGGA
TGAGACCAGCCAGATGAGTGACCTCCCTGTGAAGGTGATCCACGTGGAGAGTGGCAAGATCCTCACTGGC
ACAGATGCCCCAAAAGCCGGGCAGCTGGAAGCCTGGCTTGAAATGAACCCAGGGTATGAAGTAGCCCCCA
GGTCAGACAGTGAAGAAAGTGGCTCTGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGCAGCCTCAGCCCGC
ACAGCCCCCTACACTGCCTGTGGAAGAAAAGAAGAAGATTCCAGACCCAGACAGCGATGATGTCTCTGAG
GTGGACGCCCGACACATTATTGAGAACGCCAAGCAAGATGTGGACGATGAGTACGGTGTGTCCCAGGCCC
TTGCTCGTGGCCTGCAGTCTTACTATGCTGTGGCCCATGCAGTCACAGAGAGAGTAGATAAGCAGTCCGC
CCTCATGGTCAACGGTGTCCTCAAACAGTACCAGATCAAGGGTTTGGAGTGGCTGGTGTCCCTGTACAAC
AACAACCTGAATGGCATCCTGGCTGATGAGATGGGGCTGGGGAAGACCATCCAGACCATCGCGCTCATCA
CATACCTCATGGAGCACAAGCGCATCAACGGGCCTTTCCTCATCATCGTGCCTCTCTCGACACTGTCAAA
CTGGGCGTATGAATTTGACAAGTGGGCCCCCTCTGTGGTGAAGGTTTCTTACAAGGGCTCTCCAGCTGCA
AGGCGAGCTTTTGTCCCACAGCTTCGCAGTGGGAAGTTCAACGTCTTACTGACCACCTATGAATATATCA
TCAAAGACAAGCATATCCTAGCCAAGATCCGCTGGAAGTACATGATTGTGGATGAAGGCCACCGCATGAA
AAACCACCACTGCAAGTTGACGCAGGTCCTTAACACACACTACGTGGCCCCTCGGCGCCTGCTTCTTACA
GGCACACCACTGCAGAACAAGCTACCGGAGCTCTGGGCCCTGCTTAACTTCCTGCTCCCCACTATCTTCA
AGAGCTGCAGCACCTTCGAACAGTGGTTCAATGCACCCTTTGCCATGACTGGAGAAAAGGTGGACCTGAA
TGAAGAGGAGACTATCCTCATTATTCGTCGCCTACACAAAGTTCTGCGGCCCTTCCTGCTGCGGCGGCTC
AAGAAGGAAGTTGAAGCCCAGCTCCCTGAGAAGGTAGAGTATGTCATCAAATGCGACATGTCAGCCCTGC
AGCGTGTGCTGTACCGTCACATGCAGGCCAAAGGTGTGCTGCTGACTGACGGCTCCGAGAAGGACAAGAA
GGGCAAAGGTGGCACCAAGACACTGATGAACACTATTATGCAACTGCGTAAGATCTGCAACCACCCCTAC
ATGTTCCAGCACATCGAGGAGTCCTTTTCTGAGCACTTGGGGTTCACCGGCGGCATCGTGCAAGGATTGG
ACCTTTACCGTGCCTCAGGGAAATTTGAACTTCTTGATAGAATTCTACCCAAACTCCGTGCAACGAACCA
TAAAGTGCTCCTCTTTTGCCAAATGACCTCCCTCATGACCATCATGGAAGACTACTTTGCATACCGTGGC
TTCAAATACCTCAGGCTTGATGGAACCACAAAAGCAGAAGACCGGGGCATGCTGTTGAAAACCTTTAATG
AACCTGGCTCTGAGTATTTCATTTTCCTGCTCAGTACCCGTGCTGGGGGGCTGGGCCTGAATCTGCAGTC
AGCTGACACTGTGATCATCTTTGACAGTGACTGGAATCCCCACCAGGACCTGCAAGCACAGGATCGAGCC
CATCGCATTGGACAGCAGAATGAGGTGCGTGTTCTTCGCCTGTGCACGGTCAACAGTGTGGAAGAGAAGA
TACTGGCTGCTGCCAAATACAAACTCAATGTGGATCAGAAGGTGATCCAGGCAGGCATGTTCGACCAGAA
GTCGTCCAGCCATGAGAGGCGTGCCTTCCTGCAGGCCATCCTGGAGCACGAGGAGCAGGATGAGGAGGAA
GATGAGGTGCCTGATGATGAGACCGTCAACCAGATGATTGCCCGGCACGAAGAAGAGTTTGACCTCTTCA
TGCGCATGGACTTGGACCGCCGGCGTGAAGAAGCCCGCAACCCCAAGCGGAAGCCACGCCTGATGGAAGA
GGATGAGCTCCCATCCTGGATCATCAAGGATGATGCCGAGGTGGAGCGGCTGACATGTGAAGAGGAAGAG
GAGAAGATGTTCGGCCGTGGTTCTCGCCACCGCAAGGAGGTAGACTACAGCGACTCACTGACAGAGAAGC
AGTGGCTCAAGACCCTGAAGGCTATCGAGGAGGGCACGCTGGAGGAGATCGAAGAGGAGGTCCGGCAGAA
GAAATCTTCACGTAAGCGTAAGCGAGACAGCGAGGCCGGCTCCTCCACCCCGACCACCAGCACCCGCAGC
CGTGACAAGGATGAGGAGAGCAAGAAGCAGAAGAAACGTGGGCGGCCACCTGCTGAGAAGCTGTCCCCAA
ACCCACCTAACCTCACCAAGAAGATGAAGAAGATCGTGGATGCTGTGATCAAGTACAAAGACAGCAGCAG
TGGACGTCAGCTCAGCGAGGTGTTCATCCAGCTCCCCTCTCGCAAGGAGCTTCCTGAGTACTATGAGCTC
ATCCGAAAGCCTGTGGACTTCAAGAAGATCAAGGAACGCATCCGAAACCACAAGTACCGCAGCCTCAATG
ACCTGGAGAAGGATGTGATGCTGCTGTGCCAGAACGCTCAGACGTTCAACCTCGAGGGTTCCCTGATCTA
TGAGGACTCCATCGTCCTGCAGTCTGTCTTCACCAGCGTACGGCAGAAGATTGAGAAGGAGGACGACAGT
GAAGGCGAGGAAAGCGAGGAGGAGGAGGAGGGCGAGGAGGAAGGCTCCGAGTCTGAGTCCCGCTCCGTCA
AGGTGAAGATCAAGCTGGGCCGCAAGGAGAAGGCCCAGGACCGACTCAAGGGGGGCCGCCGGCGGCCAAG
CCGGGGATCCCGGGCCAAGCCGGTTGTGAGTGACGATGACAGTGAGGAGGAGCAGGAGGAGGACCGCTCA
GGAAGTGGCAGTGAGGAAGACTGA

Translation (1617 aa):
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQGPGGYPQDNMH
QMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMAPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPS
SGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPM
PGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGP
PKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQS
RITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFREYH
RSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEY
VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTG
TDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSE
VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYN
NNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLT
GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRL
KKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPY
MFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG
FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA
HRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE
DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE
EKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRS
RDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS
EGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRS
GSGSEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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