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Report for CCDS5233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5233.1 Public Homo sapiens 6 ARMT1 24 110 108 CCDS HistoryNCBI Gene:79624Re-query CCDS DB by CCDS ID:5233.1Re-query CCDS DB by GeneID:79624See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5233.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367294.4 ENSP00000356263.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367294.4Link to Ensembl Protein Viewer:ENSP00000356263.3Re-query CCDS DB by Nucleotide ID:ENST00000367294Re-query CCDS DB by Protein ID:ENSP00000356263
Original member Current member NCBI NM_024573.3 NP_078849.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024573.3Link to Protein Sequence:NP_078849.1Re-query CCDS DB by Nucleotide ID:NM_024573Re-query CCDS DB by Protein ID:NP_078849Link to BLAST:NP_078849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078849.1 441 Q9H993 441 100% 0 0

Chromosomal Locations for CCDS 5233.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 151452546 151452586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151454548 151454653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151458328 151458572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151464453 151464618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151468343 151469110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCTGTCGTCCCGGCGTCTCTCTCAGGACAGGACGTGGGATCATTTGCATATCTTACAATTAAAGACA
GAATACCACAGATCTTAACTAAGGTTATTGATACATTGCATCGACATAAAAGTGAATTTTTTGAGAAACA
CGGAGAGGAAGGCGTGGAAGCTGAAAAGAAAGCTATCTCTCTCCTTTCTAAATTACGGAATGAATTGCAA
ACAGATAAACCATTTATCCCCTTGGTTGAGAAATTTGTTGATACTGATATATGGAATCAGTACCTAGAAT
ATCAACAGAGTCTTTTAAATGAAAGTGATGGAAAATCAAGATGGTTCTACTCACCGTGGTTGTTGGTAGA
ATGTTACATGTATCGAAGAATTCATGAAGCAATTATCCAGAGTCCACCAATCGATTACTTTGATGTATTT
AAAGAATCAAAAGAGCAAAATTTCTATGGGTCACAGGAATCCATCATTGCTTTATGTACTCACCTGCAAC
AATTGATAAGAACTATTGAAGACCTAGATGAAAATCAGCTGAAAGATGAGTTTTTTAAACTTCTGCAGAT
TTCACTGTGGGGAAATAAGTGTGATCTGTCTCTCTCAGGTGGAGAAAGTAGTTCTCAGAATACCAATGTA
CTAAATTCATTGGAAGACCTAAAACCTTTCATTTTATTGAATGATATGGAACATCTTTGGTCATTGCTTA
GCAATTGCAAGAAAACAAGAGAAAAAGCTTCTGCTACTAGAGTGTATATTGTTCTCGATAATTCTGGATT
TGAGCTTGTTACAGATTTAATATTAGCCGACTTCTTGTTGTCCTCTGAACTGGCTACTGAGGTTCATTTT
TATGGAAAAACAATTCCATGGTTTGTTTCTGATACTACTATACATGATTTTAATTGGTTAATTGAACAGG
TAAAACACAGTAATCATAAGTGGATGTCCAAGTGTGGGGCTGACTGGGAAGAGTATATTAAAATGGGTAA
ATGGGTTTACCACAATCATATATTTTGGACTCTGCCTCATGAGTACTGTGCAATGCCTCAGGTTGCACCT
GACTTATATGCTGAACTACAGAAGGCACATTTAATTTTATTCAAGGGTGATTTGAATTACAGGAAGTTGA
CAGGTGACAGAAAATGGGAGTTTTCTGTTCCATTTCATCAGGCTCTGAATGGCTTCCATCCTGCACCACT
CTGTACCATAAGAACATTAAAAGCTGAAATTCAGGTTGGTCTGCAGCCTGGGCAAGGGGAACAGCTCCTG
GCCTCTGAGCCCAGCTGGTGGACCACTGGAAAATATGGAATATTTCAGTACGATGGTCCCCTTTGA

Translation (441 aa):
MAVVPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAISLLSKLRNELQ
TDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYMYRRIHEAIIQSPPIDYFDVF
KESKEQNFYGSQESIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWGNKCDLSLSGGESSSQNTNV
LNSLEDLKPFILLNDMEHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFLLSSELATEVHF
YGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMGKWVYHNHIFWTLPHEYCAMPQVAP
DLYAELQKAHLILFKGDLNYRKLTGDRKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLL
ASEPSWWTTGKYGIFQYDGPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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