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Report for CCDS52322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52322.1 Public Mus musculus 7 Rnf169 23 108 98 CCDS HistoryNCBI Gene:108937Re-query CCDS DB by CCDS ID:52322.1Re-query CCDS DB by GeneID:108937See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080817.5 ENSMUSP00000079631.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080817.5Link to Ensembl Protein Viewer:ENSMUSP00000079631.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000080817Re-query CCDS DB by Protein ID:ENSMUSP00000079631
Original member Current member NCBI NM_175388.3 NP_780597.2 Accepted alive Link to Nucleotide Sequence:NM_175388.3Link to Protein Sequence:NP_780597.2Re-query CCDS DB by Nucleotide ID:NM_175388Re-query CCDS DB by Protein ID:NP_780597Link to BLAST:NP_780597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780597.2 694 E9Q7F2 694 100% 0 0

Chromosomal Locations for CCDS 52322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99925302 99926483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99927093 99927192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99935162 99935280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99942959 99943105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99955467 99955540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99979972 99980434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGCGGCGGCAGGTCCGAGCACTCGGGCTTCTTCCGCTGCGGCCGCGGCAGCTCTGAGTCGGCGGGGCC
GGAGGGGCCGCTGTGACGAGATGGCGGCAGCGAAAGCCGGGGCTCCGGGCCCGGCCTCCAGCCCCGCGTT
GTTAGTGTTGCGGTCAGCGCCACGGCCGGAGGAGTCGGGCTGCACCGGGTGCCTGGAGACCCCGGGGGAA
GTGGCGGCCCTGCCGTGCAGCCACTCGCGGTGCCGAGGCTGCGCCTCGCGCGCGGCGGGCCCGGGCTGCC
GTCGCTGCCGTCCCCGCGGTTCGGGCTGGGCCCGCCGTCGGGCGCGCGACGACGGCCAGGCCGCCGCGGA
GCTGATGGGCGAGCGCGCCCGTCGTGGACAGCCAGAACCCTGCCGCCCGCGCCGGGACGGGGGCGCGGCT
GCCTCGGGGCCCAGGCCGGAGCCGGAGCCGCTCGCGGAGCCAGAGTTTATATTCAGAACGCCAATCAAGT
TAAGCAAGCCGGGAGAACTCAGTGAGGAGTATGGATGCCTGAGAAAGCTGAGAGGGGAGAAGTTACAGGA
AGAAAAAGATTGTGATGATCAGATACACAAGCTACTGCAGGAGGATTCCGAAATGGGGAAGAGGAAAGCT
GATGAGCAGAAAAAAAGGGATGAAGCAGTGGTGCTGAAAACAAGTCTGGAGCAGTGTCCTGCGCGTCTCT
CGGATTCAGAGAATGAAGAGCCTTCTCGGGGCCAGATGATGCAGACCCATCGCTCCGCCTTTGTTTCTAA
GAACAGCTCCTGCTCCTTAGCGTTCCTGGCAGGGAAGTTAAACACCAAGGTGCAGAGAAGTCAGAGCTGC
AGCGACACAGTTCAGGACAGAGTGAGGAGCAGGCTCAGAACAGCTCCGCCCAACAGAGCCAAGATCACAA
CTATAACTCCAGGCTCCACCCCCATTATTGGTGTTCTCTTGTCTACTCAAAACAACCGCTGCCTCTCTGC
CCCTGACTTAACCATCGAAAAGCGCCTGCCCTTCGGCTCCCTTTCATCCTTGGCTTCCTTGCATAAGCCA
GAGCGCTCCATCAGCCCTGAAAGCAATGACAGCATCTCTGAAGAGCTAAACCACTTCAAGCCCATCGTCT
GCTCGCCATGCACCCCTCCCAAGAGACTCCCTGATGGCCGGGTGCTCAGTCCTCTCATCATCAAGTCAAC
CCCTCGCAACCTGACCAGAAGCCTGCAGAAGCAGACTTCATATGAGGCCAGCCCTCGCATCCTCAAGAAG
TGGGAGCAGATCTTCCAGGAGCGGCAGATCAAGAAGACCCTTTCCAAAGCCACTCTCACCTCCCTGGCTC
CTGAAGCAGGGGAAGAGTTTCCAGGTTCTGACACAATCCATTCCAGCAAGGAGAGGCCGTCTCTGGCCTT
TAATACAAGGCTGTCCAGGGTCCAGGTGCTCTCCGAGTGTGCTGGGCCCACCTCCACTGCCCTTGAGTGC
TTCCCCTCTGTTAACCAGACCAAAGTAGAACAGGACTGTGTTAGAAAACGGAGCCGTGAGTTCTCACTGG
AAACCTGCCATTCCTCGGAGCACGGAGGAGCCTCCAGTGGGCCTTCTCTGGAACGGGAGCAGTGTGAGGA
GTCAGGGTCCACCGTGGACGCCACATTAGTCAAAACTTGCATAAGCACAGTCATGAAGACTGCAGCGGTT
AATTCACTGCTACCCAAAAATGATGTTTTGGGTGGGGTCCTCAAAACAAAACAACAACTGAAGACACTCA
ATCATTTTGATCTGGGTAATGGCATTCTGGTCAACAGCCTAGGAGAGGAGCCGATTCCTTCCCTGCGCAG
AGGCCGGAAAAGGCGCTGTAAGACCAAGCACTTGGAACAAAACGGTGTTAAAAAACTGCGACCACCGAGC
AGTGACATGGATCTGGCCCCCAAGGACCCAGGGCTGCTTGAGGTGGGGCGGAAATTGCAGCAGGAGGAAG
AGGACCAGCAGCTGGCTCTGCAGTCACATCGCATGTTTGACAGTGAGAGGCGGACTATGAGCCGGCGAAA
AGGAAGCGTAGATCAGTATCTCTTGAGGTCCAGCAGCTTGGCTGGGGCCAAGTAG

Translation (694 aa):
MAAAGPSTRASSAAAAAALSRRGRRGRCDEMAAAKAGAPGPASSPALLVLRSAPRPEESGCTGCLETPGE
VAALPCSHSRCRGCASRAAGPGCRRCRPRGSGWARRRARDDGQAAAELMGERARRGQPEPCRPRRDGGAA
ASGPRPEPEPLAEPEFIFRTPIKLSKPGELSEEYGCLRKLRGEKLQEEKDCDDQIHKLLQEDSEMGKRKA
DEQKKRDEAVVLKTSLEQCPARLSDSENEEPSRGQMMQTHRSAFVSKNSSCSLAFLAGKLNTKVQRSQSC
SDTVQDRVRSRLRTAPPNRAKITTITPGSTPIIGVLLSTQNNRCLSAPDLTIEKRLPFGSLSSLASLHKP
ERSISPESNDSISEELNHFKPIVCSPCTPPKRLPDGRVLSPLIIKSTPRNLTRSLQKQTSYEASPRILKK
WEQIFQERQIKKTLSKATLTSLAPEAGEEFPGSDTIHSSKERPSLAFNTRLSRVQVLSECAGPTSTALEC
FPSVNQTKVEQDCVRKRSREFSLETCHSSEHGGASSGPSLEREQCEESGSTVDATLVKTCISTVMKTAAV
NSLLPKNDVLGGVLKTKQQLKTLNHFDLGNGILVNSLGEEPIPSLRRGRKRRCKTKHLEQNGVKKLRPPS
SDMDLAPKDPGLLEVGRKLQQEEEDQQLALQSHRMFDSERRTMSRRKGSVDQYLLRSSSLAGAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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