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Report for CCDS5231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5231.1 Public Homo sapiens 6 ZBTB2 24 110 108 CCDS HistoryNCBI Gene:57621Re-query CCDS DB by CCDS ID:5231.1Re-query CCDS DB by GeneID:57621See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5231.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325144.5 ENSP00000323183.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325144.5Link to Ensembl Protein Viewer:ENSP00000323183.4Re-query CCDS DB by Nucleotide ID:ENST00000325144Re-query CCDS DB by Protein ID:ENSP00000323183
Original member Current member NCBI NM_020861.3 NP_065912.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020861.3Link to Protein Sequence:NP_065912.1Re-query CCDS DB by Nucleotide ID:NM_020861Re-query CCDS DB by Protein ID:NP_065912Link to BLAST:NP_065912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065912.1 514 Q8N680 514 100% 0 0

Chromosomal Locations for CCDS 5231.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 151365521 151366892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151373465 151373637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGATTTGGCCAACCATGGACTTATTCTACTGCAACAGTTAAACGCTCAGCGAGAGTTTGGTTTCCTGT
GTGACTGCACGGTTGCAATCGGCGATGTATACTTCAAGGCACACAAATCAGTTCTTGCTTCATTCTCCAA
TTACTTTAAGATGTTGTTTGTCCATCAGACCAGTGAGTGTGTCCGCTTGAAACCAACTGACATACAGCCC
GACATCTTCAGCTATCTCTTACACTTGATGTACACTGGGAAGATGGCGCCTCAGCTCATCGACCCGGTTC
GATTAGAACAGGGCATCAAGTTTCTGCACGCCTACCCGCTCATTCAGGAAGCCAGCCTCGCCAGCCAGGG
AGCCTTTTCTCACCCTGACCAAGTTTTCCCACTGGCTTCTTCATTGTATGGCATTCAGATTGCAGATCAT
CAGTTGAGACAAGCCACCAAGATTGCTTCAGCACCTGAAAAACTCGGGCGAGATCCACGGCCACAGACCT
CCAGGATAAGCCAGGAGCAGGTCCCTGAGGCCTCACAGCTCTCCCAGCTGACTTCAAATCTGGCCCAGGT
GAATCGGACAAATATGACTCCCTCAGACCCCCTGCAGACCTCGCTGTCTCCAGAACTTGTTTCCACTCCT
GTTCCTCCCCCTCCTCCCGGGGAGGAGACCAATCTGGAAGCATCTTCCTCCGATGAGCAGCCTGCGTCCC
TCACAATAGCCCACGTCAAGCCAAGCATCATGAAGAGGAATGGGAGCTTTCCAAAGTACTATGCCTGCCA
CCTGTGTGGACGGCGCTTCACTCTCCGGAGCAGCTTACGTGAACACCTCCAGATCCACACAGGAGTACCT
TTCACATCTAGCCAACAGGGAGAAAGTCGCGTCCCCCTGACTCTCTGTAGCAATGCAGCTGACCTCGGGA
AAGATGCCATGGAAGTGCCTGAAGCCGGGATGATAAGTGACAGTGAGCTGCAGCACATCTCTGATTCTCC
CATCATCGATGGGCAGCAGCAGTCGGAAACCCCACCCCCCTCAGACATTGCTGACATTGACAACCTGGAG
CAGGCCGACCAGGAGAGGGAGGTGAAGAGGCGGAAGTACGAGTGCACAATATGTGGACGCAAATTTATCC
AGAAAAGCCACTGGAGGGAACACATGTACATACACACCGGGAAGCCTTTCAAGTGCAGCACTTGTGACAA
AAGCTTTTGCAGGGCCAACCAGGCTGCCCGCCACGTGTGCCTCAACCAGAGCATCGACACTTACACCATG
GTGGACAAACAGACTCTGGAACTCTGCACATTTGAGGAAGGGAGTCAGATGGACAACATGCTGGTGCAAA
CAAACAAACCCTACAAATGCAACTTGTGTGACAAAACATTCTCCACTCCCAATGAGGTTGTTAAACATTC
ATGCCAAAACCAGAACTCGGATGTTTTTGCCCTAGACGAAGGGCGATCCATTCTCCTGGGCAGTGGGGAC
TCGGAAGTAACGGAGCCTGACCACCCAGTGTTAGCTTCCATCAAAAAGGAACAAGAAACCGTCTTACTAG
ACTGA

Translation (514 aa):
MDLANHGLILLQQLNAQREFGFLCDCTVAIGDVYFKAHKSVLASFSNYFKMLFVHQTSECVRLKPTDIQP
DIFSYLLHLMYTGKMAPQLIDPVRLEQGIKFLHAYPLIQEASLASQGAFSHPDQVFPLASSLYGIQIADH
QLRQATKIASAPEKLGRDPRPQTSRISQEQVPEASQLSQLTSNLAQVNRTNMTPSDPLQTSLSPELVSTP
VPPPPPGEETNLEASSSDEQPASLTIAHVKPSIMKRNGSFPKYYACHLCGRRFTLRSSLREHLQIHTGVP
FTSSQQGESRVPLTLCSNAADLGKDAMEVPEAGMISDSELQHISDSPIIDGQQQSETPPPSDIADIDNLE
QADQEREVKRRKYECTICGRKFIQKSHWREHMYIHTGKPFKCSTCDKSFCRANQAARHVCLNQSIDTYTM
VDKQTLELCTFEEGSQMDNMLVQTNKPYKCNLCDKTFSTPNEVVKHSCQNQNSDVFALDEGRSILLGSGD
SEVTEPDHPVLASIKKEQETVLLD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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