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Report for CCDS5216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5216.1 Public Homo sapiens 6 GINM1 24 110 108 CCDS HistoryNCBI Gene:116254Re-query CCDS DB by CCDS ID:5216.1Re-query CCDS DB by GeneID:116254See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5216.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367419.10 ENSP00000356389.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367419.10Link to Ensembl Protein Viewer:ENSP00000356389.5Re-query CCDS DB by Nucleotide ID:ENST00000367419Re-query CCDS DB by Protein ID:ENSP00000356389
Original member Current member NCBI NM_138785.5 NP_620140.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138785.5Link to Protein Sequence:NP_620140.1Re-query CCDS DB by Nucleotide ID:NM_138785Re-query CCDS DB by Protein ID:NP_620140Link to BLAST:NP_620140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620140.1 330 Q9NU53 330 100% 0 0

Chromosomal Locations for CCDS 5216.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149566415 149566534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149572285 149572344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149572507 149572603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149578822 149578973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149579834 149579990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149580593 149580723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149582440 149582603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149590727 149590838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGAGGGCGCTCCACCGGGGTCGCTCGCCCTCCGGCTCCTGCTGTTCGTGGCGCTACCCGCCTCCGGCT
GGCTGACGACGGGCGCCCCCGAGCCGCCGCCGCTGTCCGGAGCCCCACAGGACGGCATCAGAATTAATGT
AACTACACTGAAAGATGATGGGGACATATCTAAACAGCAGGTTGTTCTTAACATAACCTATGAGAGTGGA
CAGGTGTATGTAAATGACTTACCTGTAAATAGTGGTGTAACCCGAATAAGCTGTCAGACTTTGATAGTGA
AGAATGAAAATCTTGAAAATTTGGAGGAAAAAGAATATTTTGGAATTGTCAGTGTAAGGATTTTAGTTCA
TGAGTGGCCTATGACATCTGGTTCCAGTTTGCAACTAATTGTCATTCAAGAAGAGGTAGTAGAGATTGAT
GGAAAACAAGTTCAGCAAAAGGATGTCACTGAAATTGATATTTTAGTTAAGAACCGGGGAGTACTCAGAC
ATTCAAACTATACCCTCCCTTTGGAAGAAAGCATGCTCTACTCTATTTCTCGAGACAGTGACATTTTATT
TACCCTTCCTAACCTCTCCAAAAAAGAAAGTGTTAGTTCACTGCAAACCACTAGCCAGTATCTTATCAGG
AATGTGGAAACCACTGTAGATGAAGATGTTTTACCTGGCAAGTTACCTGAAACTCCTCTCAGAGCAGAGC
CGCCATCTTCATATAAGGTAATGTGTCAGTGGATGGAAAAGTTTAGAAAAGATCTGTGTAGGTTCTGGAG
CAACGTTTTCCCAGTATTCTTTCAGTTTTTGAACATCATGGTGGTTGGAATTACAGGAGCAGCTGTGGTA
ATAACCATCTTAAAGGTGTTTTTCCCAGTTTCTGAATACAAAGGAATTCTTCAGTTGGATAAAGTGGACG
TCATACCTGTGACAGCTATCAACTTATATCCAGATGGTCCAGAGAAAAGAGCTGAAAACCTTGAAGATAA
AACATGTATTTAA

Translation (330 aa):
MEGAPPGSLALRLLLFVALPASGWLTTGAPEPPPLSGAPQDGIRINVTTLKDDGDISKQQVVLNITYESG
QVYVNDLPVNSGVTRISCQTLIVKNENLENLEEKEYFGIVSVRILVHEWPMTSGSSLQLIVIQEEVVEID
GKQVQQKDVTEIDILVKNRGVLRHSNYTLPLEESMLYSISRDSDILFTLPNLSKKESVSSLQTTSQYLIR
NVETTVDEDVLPGKLPETPLRAEPPSSYKVMCQWMEKFRKDLCRFWSNVFPVFFQFLNIMVVGITGAAVV
ITILKVFFPVSEYKGILQLDKVDVIPVTAINLYPDGPEKRAENLEDKTCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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