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Report for CCDS51905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51905.1 Public Mus musculus 6 Cd163 23 108 98 CCDS HistoryNCBI Gene:93671Re-query CCDS DB by CCDS ID:51905.1Re-query CCDS DB by GeneID:93671See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112541.7 ENSMUSP00000108160.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112541.7Link to Ensembl Protein Viewer:ENSMUSP00000108160.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112541Re-query CCDS DB by Protein ID:ENSMUSP00000108160
Original member Current member NCBI NM_001170395.1 NP_001163866.1 Accepted alive Link to Nucleotide Sequence:NM_001170395.1Link to Protein Sequence:NP_001163866.1Re-query CCDS DB by Nucleotide ID:NM_001170395Re-query CCDS DB by Protein ID:NP_001163866Link to BLAST:NP_001163866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163866.1 1159 Q2VLH6-2 1159 100% 0 0

Chromosomal Locations for CCDS 51905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124304740 124304785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124305797 124305880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124307001 124307321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124308944 124309267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124311387 124311707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124312421 124312741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124317302 124317616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124317711 124318025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124318654 124318749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124318842 124319156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124320355 124320678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124325261 124325572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124326116 124326145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124326501 124326608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124327898 124327987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124328962 124329097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124329583 124329604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3480 nt):
ATGGGTGGACACAGAATGGTTCTTCTTGGAGGTGCTGGATCTCCTGGTTGTAAAAGGTTTGTCCATCTAG
GTTTCTTTGTTGTGGCTGTGAGCTCACTTCTCAGTGCCTCTGCTGTCACTAACGCTCCTGGAGAAATGAA
GAAGGAACTGAGACTGGCGGGTGGTGAAAACAACTGTAGTGGGAGAGTGGAACTTAAGATCCATGACAAG
TGGGGCACAGTGTGCAGTAACGGCTGGAGCATGAATGAAGTGTCCGTGGTTTGCCAGCAGCTGGGATGCC
CAACTTCTATTAAAGCCCTTGGATGGGCTAACTCCAGCGCCGGCTCTGGATATATCTGGATGGACAAAGT
TTCTTGTACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGATGGGTGGGGAAAGCATAACTGTACC
CATGAAAAAGATGCTGGAGTGACCTGCTCAGATGGATCTAATTTGGAGATGAGACTGGTGAACAGTGCGG
GCCACCGATGCTTAGGAAGAGTAGAAATAAAGTTCCAGGGAAAGTGGGGGACGGTGTGTGACGACAACTT
CAGCAAAGATCACGCTTCTGTGATTTGTAAACAGCTTGGATGTGGAAGTGCCATTAGTTTCTCTGGCTCA
GCTAAATTGGGAGCTGGTTCTGGACCAATCTGGCTCGATGACCTGGCATGCAATGGAAATGAGTCAGCTC
TCTGGGACTGCAAACACCGGGGATGGGGCAAGCATAACTGTGACCATGCTGAGGATGTCGGTGTGATTTG
CTTAGAGGGAGCAGATCTGAGCCTGAGACTAGTGGATGGAGTGTCCAGATGTTCAGGAAGATTGGAAGTG
AGATTCCAAGGAGAATGGGGGACCGTGTGTGATGATAACTGGGATCTCCGGGATGCTTCTGTGGTGTGCA
AGCAACTGGGATGTCCAACTGCCATCAGTGCCATTGGTCGAGTTAATGCCAGTGAGGGATCTGGACAGAT
TTGGCTTGACAACATTTCATGCGAAGGACATGAGGCAACTCTTTGGGAGTGTAAACACCAAGAGTGGGGA
AAGCATTACTGTCATCATAGAGAAGACGCTGGTGTGACATGTTCTGATGGAGCAGATCTGGAACTTAGAC
TTGTAGGTGGAGGCAGTCGCTGTGCTGGCATTGTGGAGGTGGAGATTCAGAAGCTGACTGGGAAGATGTG
TAGCCGAGGCTGGACACTGGCAGATGCGGATGTGGTTTGCAGACAGCTTGGATGTGGATCTGCGCTTCAA
ACCCAGGCTAAGATCTACTCTAAAACTGGGGCAACAAATACGTGGCTCTTTCCTGGATCTTGTAATGGAA
ATGAAACTACTTTTTGGCAATGCAAAAACTGGCAGTGGGGCGGCCTTTCCTGTGATAATTTCGAAGAAGC
CAAAGTTACCTGCTCAGGCCACAGGGAACCCAGACTGGTTGGAGGAGAAATCCCATGCTCTGGTCGTGTG
GAAGTGAAACACGGAGACGTGTGGGGCTCCGTCTGTGATTTTGACTTGTCTCTGGAAGCTGCCAGTGTGG
TGTGCAGGGAATTACAATGTGGAACAGTCGTCTCTATCCTAGGGGGAGCACATTTTGGAGAAGGAAGTGG
ACAGATCTGGGGTGAAGAATTCCAGTGTAGTGGGGATGAGTCCCATCTTTCACTATGCTCAGTGGCGCCC
CCGCTAGACAGAACTTGTACCCACAGCAGGGATGTCAGCGTAGTCTGCTCACGATACATAGATATTCGTC
TGGCAGGCGGCGAGTCCTCCTGTGAGGGAAGAGTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTG
CAGTTCTCATTGGGACATGGAAGATGCTCATGTCTTATGTCAGCAGCTGAAGTGTGGGGTTGCCCAATCT
ATTCCAGAAGGAGCACATTTTGGGAAAGGAGCTGGTCAGGTCTGGAGTCACATGTTCCACTGCACTGGAA
CTGAGGAACATATAGGAGATTGCCTCATGACTGCTCTGGGTGCGCCGACGTGTTCCGAAGGACAGGTGGC
CTCTGTCATCTGCTCAGGAAACCAATCCCAGACACTATTGCCATGTAGTTCATTGTCTCCAGTCCAAACA
ACAAGCTCTACAATTCCAAAGGAGAGTGAAGTTCCCTGCATAGCAAGTGGCCAGCTTCGCTTGGTAGGTG
GAGGTGGTCGCTGCGCTGGAAGAGTGGAGGTCTACCACGAGGGCTCTTGGGGCACCGTCTGTGATGACAA
TTGGGATATGACTGATGCCAATGTGGTGTGCAAGCAGCTGGACTGTGGCGTGGCAATTAACGCCACTGGC
TCTGCTTACTTCGGGGAAGGAGCAGGAGCTATCTGGCTAGACGAAGTCATCTGCACTGGGAAAGAGTCTC
ATATTTGGCAGTGCCATTCACATGGCTGGGGACGCCATAACTGCAGGCACAAAGAAGATGCAGGTGTTAT
CTGCTCCGAGTTCATGTCTCTGAGGCTGACCAACGAAGCCCACAAAGAAAACTGCACAGGTCGCCTTGAA
GTGTTTTACAATGGTACATGGGGCAGTATTGGCAGTAGCAATATGTCTCCAACCACTGTGGGGGTGGTGT
GCCGTCAGCTGGGCTGTGCAGACAACGGGACTGTGAAACCCATACCTTCAGACAAGACACCATCCAGGCC
CATGTGGGTAGATCGTGTGCAGTGTCCAAAAGGAGTTGACACTTTGTGGCAGTGCCCCTCGTCACCTTGG
AAACAGAGACAGGCCAGCCCCTCCTCCCAGGAGTCCTGGATCATCTGTGACAACAAAATAAGACTCCAGG
AAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCACAAAGGTTCCTGGGGAACAGTGTGTGATGA
CTCCTGGGATCTTAATGATGCTAAGGTTGTATGTAAGCAGTTGGGCTGTGGCCAAGCTGTGAAGGCACTA
AAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTCAATGAAATTAAGTGTAGAGGGAATGAGT
CTTCCCTGTGGGATTGTCCTGCCAAACCGTGGAGTCACAGCGACTGTGGGCACAAAGAAGATGCTTCCAT
CCAGTGCCTCCCAAAAATGACTTCAGAATCACATCATGGCACAGGTCACCCCACCCTCACGGCACTCTTG
GTTTGTGGAGCCATTCTATTGGTCCTCCTCATTGTCTTCCTCCTGTGGACTCTGAAGCGACGACAGATTC
AGCGACTTACAGTTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCAAA
GGCGGATGATCTGGACTTGCTGAAATCCTCGGAAAATTCCAACAATTCATATGATTTTAATGATGATGGA
CTGACATCTTTGTCTAAATATCTTCCTATTTCTGGAATTAAAAAGGGGTCATTCAGAGGCACACTGAGAA
GGAAAATGATAATTTATAATCCACTGAGGTTGGAGTTTAAGAAGCCTTGA

Translation (1159 aa):
MGGHRMVLLGGAGSPGCKRFVHLGFFVVAVSSLLSASAVTNAPGEMKKELRLAGGENNCSGRVELKIHDK
WGTVCSNGWSMNEVSVVCQQLGCPTSIKALGWANSSAGSGYIWMDKVSCTGNESALWDCKHDGWGKHNCT
HEKDAGVTCSDGSNLEMRLVNSAGHRCLGRVEIKFQGKWGTVCDDNFSKDHASVICKQLGCGSAISFSGS
AKLGAGSGPIWLDDLACNGNESALWDCKHRGWGKHNCDHAEDVGVICLEGADLSLRLVDGVSRCSGRLEV
RFQGEWGTVCDDNWDLRDASVVCKQLGCPTAISAIGRVNASEGSGQIWLDNISCEGHEATLWECKHQEWG
KHYCHHREDAGVTCSDGADLELRLVGGGSRCAGIVEVEIQKLTGKMCSRGWTLADADVVCRQLGCGSALQ
TQAKIYSKTGATNTWLFPGSCNGNETTFWQCKNWQWGGLSCDNFEEAKVTCSGHREPRLVGGEIPCSGRV
EVKHGDVWGSVCDFDLSLEAASVVCRELQCGTVVSILGGAHFGEGSGQIWGEEFQCSGDESHLSLCSVAP
PLDRTCTHSRDVSVVCSRYIDIRLAGGESSCEGRVELKTLGAWGPLCSSHWDMEDAHVLCQQLKCGVAQS
IPEGAHFGKGAGQVWSHMFHCTGTEEHIGDCLMTALGAPTCSEGQVASVICSGNQSQTLLPCSSLSPVQT
TSSTIPKESEVPCIASGQLRLVGGGGRCAGRVEVYHEGSWGTVCDDNWDMTDANVVCKQLDCGVAINATG
SAYFGEGAGAIWLDEVICTGKESHIWQCHSHGWGRHNCRHKEDAGVICSEFMSLRLTNEAHKENCTGRLE
VFYNGTWGSIGSSNMSPTTVGVVCRQLGCADNGTVKPIPSDKTPSRPMWVDRVQCPKGVDTLWQCPSSPW
KQRQASPSSQESWIICDNKIRLQEGHTDCSGRVEIWHKGSWGTVCDDSWDLNDAKVVCKQLGCGQAVKAL
KEAAFGPGTGPIWLNEIKCRGNESSLWDCPAKPWSHSDCGHKEDASIQCLPKMTSESHHGTGHPTLTALL
VCGAILLVLLIVFLLWTLKRRQIQRLTVSSRGEVLIHQVQYQEMDSKADDLDLLKSSENSNNSYDFNDDG
LTSLSKYLPISGIKKGSFRGTLRRKMIIYNPLRLEFKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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