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Report for CCDS5190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5190.1 Public Homo sapiens 6 PBOV1 24 110 108 CCDS HistoryNCBI Gene:59351Re-query CCDS DB by CCDS ID:5190.1Re-query CCDS DB by GeneID:59351See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527246.3 ENSP00000432353.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000527246.3Link to Ensembl Protein Viewer:ENSP00000432353.1Re-query CCDS DB by Nucleotide ID:ENST00000527246Re-query CCDS DB by Protein ID:ENSP00000432353
Original member Current member NCBI NM_021635.3 NP_067648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021635.3Link to Protein Sequence:NP_067648.1Re-query CCDS DB by Nucleotide ID:NM_021635Re-query CCDS DB by Protein ID:NP_067648Link to BLAST:NP_067648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067648.1 135 Q9GZY1 135 100% 0 0

Chromosomal Locations for CCDS 5190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138217988 138218395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGAGGGCCTTCTTAAGGAACCAGAAATATGAGGATATGCACAATATTATTCACATTTTACAGATCAGAA
AATTGAGGCACAGATTAAGTAACTTCCCAAGGCTACCAGGCATTCTAGCTCCAGAAACTGTGCTCTTACC
ATTCTGCTACAAGGTATTTCGAAAAAAAGAAAAAGTAAAAAGAAGTCAAAAGGCAACAGAGTTCATTGAT
TATTCCATAGAACAGTCACACCATGCAATTCTCACACCCTTGCAGACACACTTGACCATGAAAGGTTCCT
CAATGAAATGTTCCTCATTATCTTCAGAAGCCATATTATTCACATTGACTTTGCAGTTAACTCAGACCCT
AGGTCTGGAATGCTGTCTTCTCTACTTATCCAAAACTATACATCCACAGATCATATAA

Translation (135 aa):
MRAFLRNQKYEDMHNIIHILQIRKLRHRLSNFPRLPGILAPETVLLPFCYKVFRKKEKVKRSQKATEFID
YSIEQSHHAILTPLQTHLTMKGSSMKCSSLSSEAILFTLTLQLTQTLGLECCLLYLSKTIHPQII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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