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Report for CCDS51873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51873.1 Public Mus musculus 6 Irak2 23 108 98 CCDS HistoryNCBI Gene:108960Re-query CCDS DB by CCDS ID:51873.1Re-query CCDS DB by GeneID:108960See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089022.8 ENSMUSP00000086416.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089022.8Link to Ensembl Protein Viewer:ENSMUSP00000086416.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089022Re-query CCDS DB by Protein ID:ENSMUSP00000086416
Original member Current member NCBI NM_001113553.1 NP_001107025.1 Accepted alive Link to Nucleotide Sequence:NM_001113553.1Link to Protein Sequence:NP_001107025.1Re-query CCDS DB by Nucleotide ID:NM_001113553Re-query CCDS DB by Protein ID:NP_001107025Link to BLAST:NP_001107025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107025.1 574 Q8CFA1-2 574 100% 0 0

Chromosomal Locations for CCDS 51873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113638548 113638641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113647639 113647821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113670199 113670293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113672739 113672939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113673023 113673087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113675631 113675745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113676587 113676696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113678647 113678842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113682733 113682795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113686758 113686958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113690783 113691071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113693668 113693780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCTTGCTACATCTACCAGCTGCCGTCCTGGGTGCTGGACGACCTGTGCCGCAATATCGACACGCTCA
GTGAGTGGGACTGGATGCAGTTCGCTTCCTACGTGATCACAGACCTGACACAGCTGAGGAAGATCAAGTC
CATGGAGAGGGTCCAGGGGGTGAGCATCACCCGGGAGCTACTGTGGTGGTGGTCCATGCGGCAGGCCACG
GTCCAGCAGCTGGTGGACCTCCTGTGTCACCTGGAACTCTACCGAGCTGCCCAGATTGTCTTGAGCTGGC
CCATCATGGCTGGGGCCCAGCGGCAGCGTCCGTGCGAGATGGATGCCCCTTGTTCCCTGAAAACTGATGC
ACCCGACTCTCCCCAGTCTAAGTATTGCAGTACTTCCACATCTGCCCCCAAGCAAGAAAGGCTTTTGGGT
TTGCCCGGAGACAGGCTTTTCTGGAGTGAAGCAGATGTCGTCCAAGCAACTGAGGACTTTGACCAAAGCC
ACCGAATCAGCGAGGGCACCTTTGCCGATATCTACCAGGGTCAAAGGAACGGTGTGGCCTTCGCCTTCAA
GAAGCTCAGGGAGGTGGCCGGCTCCAGTCCAGGGTCCATGGACAGATTCCTACAGGCAGAGATGCAGCTC
TGCCTCAGATGCTGCCACGCGAACGTCCTACCTCTGCTGGGTTTCTGCACTGGAAGACAGTTCCACAGCC
TCATCTACCCCTACATGGCAAATGGCTCTCTGCACGACAGACTCTGGGCTCAGGGCAACTCAGACATGCT
GCCCTGGCCACAGCGGGCCAGCATCTGCTCAGGGCTGCTTCTAGCCGTGGAGCACCTGCATAGCCTGGAC
ATCATCCACAGCAATGTTAAGAGTGCCAACGTCTTGCTGGACCAGCATCTTAACCCCAAGCTGGCTCATC
CTGTGGCTCACCCTCATCCCGACAATAAAAAGACCAAATATACCGTCATGAGGACTCACCTGTTCCAGGC
CTCAGCTGCATATCTGCCGGAACACTTCATCAGAGTGGGGCAGCTGACCAAGCAGGTGGACATCTTCAGC
TGTGGAATTGTATTGGCCGAGGTCCTTACCGGCATCCCTGCGATGGACAAGGACCGCAGTCCAGTTTACC
TGAAGGATTTGCTTCTCAGTGAGATTCCCAACAGTACTTCTTCAGTCTGCTCCAGGAAGACCAGCATGGG
GAAGGCAGTGGTGAAAGAGATCTGCCAGAGACATGTGGAGAAGAGGGCAGGGCTGCTGCCTGAGGCCTGT
GAGGAAGCCTGGGCCACCGCTGTGAGTGTCTGCCTGCGGAGGCGCAATGCCAGCGTGGAGGAGGCACGAG
TCTCCCTGGCCGGGGTGGAGGAGCAACTCCGAGGGCAGCTGTCCCTTCCCTGGAGCAGGGTTTCTGAGGC
CACAGGCTCATCTTCCAATACCCCGGAGGAAACAGATGACGTTGACAATTCCAGCCTCAGCGTCCCTTCT
TTGGTTATGATGGCATCGTGCCCAGGGGCTGCCTCCTCTCCACTCTTCACGGGACATGGAGCAGCACAGC
CATCCACCAGTGGGAGACAGGAGGCTGACTCCTCGTCAGAGGCTTGCACAGGCCCACAGACACCCCAGAA
CGCTACAGAGACTTCATGGAAAATTGAGATCAATGAAGCCAAAAGGAGACTGATGGAGAACATCGTACTC
TACAAAGAAGAGAGACTGGACAGCAGCGAGCTCTTTGGACCCTGA

Translation (574 aa):
MACYIYQLPSWVLDDLCRNIDTLSEWDWMQFASYVITDLTQLRKIKSMERVQGVSITRELLWWWSMRQAT
VQQLVDLLCHLELYRAAQIVLSWPIMAGAQRQRPCEMDAPCSLKTDAPDSPQSKYCSTSTSAPKQERLLG
LPGDRLFWSEADVVQATEDFDQSHRISEGTFADIYQGQRNGVAFAFKKLREVAGSSPGSMDRFLQAEMQL
CLRCCHANVLPLLGFCTGRQFHSLIYPYMANGSLHDRLWAQGNSDMLPWPQRASICSGLLLAVEHLHSLD
IIHSNVKSANVLLDQHLNPKLAHPVAHPHPDNKKTKYTVMRTHLFQASAAYLPEHFIRVGQLTKQVDIFS
CGIVLAEVLTGIPAMDKDRSPVYLKDLLLSEIPNSTSSVCSRKTSMGKAVVKEICQRHVEKRAGLLPEAC
EEAWATAVSVCLRRRNASVEEARVSLAGVEEQLRGQLSLPWSRVSEATGSSSNTPEETDDVDNSSLSVPS
LVMMASCPGAASSPLFTGHGAAQPSTSGRQEADSSSEACTGPQTPQNATETSWKIEINEAKRRLMENIVL
YKEERLDSSELFGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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