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Report for CCDS51857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51857.1 Public Mus musculus 6 Kbtbd8 23 108 98 CCDS HistoryNCBI Gene:243574Re-query CCDS DB by CCDS ID:51857.1Re-query CCDS DB by GeneID:243574See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119582.2 ENSMUSP00000113739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119582.2Link to Ensembl Protein Viewer:ENSMUSP00000113739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119582Re-query CCDS DB by Protein ID:ENSMUSP00000113739
Original member Current member NCBI NM_001102670.2 NP_001096140.1 Accepted alive Link to Nucleotide Sequence:NM_001102670.2Link to Protein Sequence:NP_001096140.1Re-query CCDS DB by Nucleotide ID:NM_001102670Re-query CCDS DB by Protein ID:NP_001096140Link to BLAST:NP_001096140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096140.1 522 Q3UQV5-2 522 100% 0 0

Chromosomal Locations for CCDS 51857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 95121743 95122847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 95126477 95126940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGTTCACTAGCGGCCTTACAGAAAGTACTCAGAAAGAAGTTCGAATCATTGGTGTTGAAGCTGAATCAA
TGGATTTAGTATTGAATTATGCCTATACCTCTAGAGTTATTCTGACAGAGGCCAATGTTCAAGCCTTGTT
CACTACAGCTAGCATCTTCCAAATTCCTTCCATACAAGACCAGTGTGCTAAGTATATGATTAGTCATTTG
GATCCACAGAATTCTATTGGAGTCTTTATCTTTGCTGATCATTATGGTCATCAGGAGCTTGGAGATCGAT
CAAAAGAATATATCCGTAAAAAGTTTCTGTGTGTCACCAAAGAACAAGAGTTTCTCCAACTGACAAAAGA
CCAACTCATAAGCATACTAGACAGTGACGATTTAAATGTGGATCGGGAAGAACATGTTTATGAAAGCATT
ATAAGGTGGTTTGAACATGAGCAGAGTGAAAGAGAAGTACACCTTCCAGAGATTTTTGCCAAATGTATAC
GTTTTCCTCTAATGGAAGATACATTTATCGAGAAAATTCCTCCTCAGTTTGCACAGGCCATAGTCAAAAG
TTGTGGAGAACCCTCCAACACCAGTGGCTGTACACAGAGGCTTGGAATGACTGCTTCTGAAATGATCATA
TGTTTTGATGCTGCCCACAAACACTCAGGAAAGAAGCAAACAGTGCCTTGTCTAGATATCGTCACAGGAA
GAGTGTTTAAACTATGCAAACCACCAAATGACCTAAGAGAAGTTGGGATTCTTGTGTCACCAGATAATGA
CATATACATTGCAGGAGGCTACAGGCCAAGCAGCAGTGAGGTGTCCATCGACCATAAAGCAGAAAATGAT
TTTTGGATGTATGACCATTCCACCAACAGATGGCTTTCCAAGCCGTCCTTGCTTCGGGCCAGAATAGGCT
GCAAGCTAGTATACTGCTGTGGTAAAATGTATGCAATTGGAGGGCGTGTTTACGAAGGTGATGGAAGAAA
CTCACTGAAGTCTGTGGAGTGCTATGATAGCAGAGAGAATTGCTGGATGACTGTGTGTGCCATGCCAGTT
GCAATGGAGTTTCATAATGCTGTGGAGCACAAAGAGAAAATCTACGTTTTACAGGGGGAATTTTTCCTCT
TCTATGAGCCTCAAAAAGACTACTGGGGATTTTTAACCCCCATGACTGTGCCTCGAATCCAGGGCTTAGC
AGCTGTGTACAAAGACTCAATCTACTACATAGCTGGAACCTGTGGAAATCATCAGCGTGTGTTTACTGTT
GAAGCCTATGATATAGAGCTAAATAAGTGGACTCGTAAAAAGGACTTTCCGTGTGATCAGTCTATAAATC
CATACCTGAAGCTAGTACTTTTCCAGAATAAACTCCATTTATTTGTGCGAGCTACTCAAGTGACTGTTGA
AGAACATATCTTCAGAACCAGCAGGAAAAATTCTCTTTACCAATACGATGACATTGCTGACCAGTGGATG
AAAGTGTATGAGACCCCAGATCGGCTGTGGGACCTTGGCCGCCATTTTGAGTGTGCGGTGGCTAAACTCT
ATCCTCAGTGTCTTCAGAAAGTTCTTTAA

Translation (522 aa):
MFTSGLTESTQKEVRIIGVEAESMDLVLNYAYTSRVILTEANVQALFTTASIFQIPSIQDQCAKYMISHL
DPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILDSDDLNVDREEHVYESI
IRWFEHEQSEREVHLPEIFAKCIRFPLMEDTFIEKIPPQFAQAIVKSCGEPSNTSGCTQRLGMTASEMII
CFDAAHKHSGKKQTVPCLDIVTGRVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAEND
FWMYDHSTNRWLSKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWMTVCAMPV
AMEFHNAVEHKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKDSIYYIAGTCGNHQRVFTV
EAYDIELNKWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHIFRTSRKNSLYQYDDIADQWM
KVYETPDRLWDLGRHFECAVAKLYPQCLQKVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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