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Report for CCDS51840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51840.1 Public Mus musculus 6 Efcc1 23 108 98 CCDS HistoryNCBI Gene:58229Re-query CCDS DB by CCDS ID:51840.1Re-query CCDS DB by GeneID:58229See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51840.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159570.8 ENSMUSP00000138649.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159570.8Link to Ensembl Protein Viewer:ENSMUSP00000138649.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159570Re-query CCDS DB by Protein ID:ENSMUSP00000138649
Original member Current member NCBI NM_001159697.1 NP_001153169.1 Accepted alive Link to Nucleotide Sequence:NM_001159697.1Link to Protein Sequence:NP_001153169.1Re-query CCDS DB by Nucleotide ID:NM_001159697Re-query CCDS DB by Protein ID:NP_001153169Link to BLAST:NP_001153169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153169.1 558 Q9JJF6-1 558 100% 0 0

Chromosomal Locations for CCDS 51840.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87730893 87731540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87732674 87732936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87749132 87749277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87750624 87750762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87751764 87751905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87753048 87753185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87753741 87753804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87754723 87754859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGAGAGCTCGGCGGGTGACCCATACCGGCGACCTGCGCGGCGCACTCAGTGGCTGCTGAGTGCCTTGG
CTCACCACTACGGGCTGGACCGCGGCGTGGAGAATGAGATCGTGGTGCTGGCTACCGGTCTGGATCAGTA
TCTGCAGGAGGTTTTCCACCACTTGGACTGCCGGGGAGCGGGCCGCCTACCGCGCGCCGACTTCCGTGCG
CTCTGCGCGGTACTGGGGCTGAACGCTGACGGGGAGACGGCCACGGAGGACGCAAACTCCGCGGAGGCGG
CCTCCACGAACCCGGCTGCTGGGATGATCGCTGGCGGGGACGCGGACGTCAGGGAAGAGGCGCGCCTGGC
TCTGCGAGCCGACCCTCCAGAGCTCACCTTCCGCCAGTTCCACGCGCGCCTCTGCGGCTATTTCAGTAGC
CGAGCGGGGCCCCGGCTGCCCCGCGGAGCTCTTAGCGAGCACATCGAGACACAGATCCGCCTCCGCCGCC
CGCGCCGCCGCCGCCGGCCTGGCTCACCGAGCCTGCACGGTGGCGCCTATGGCGAGCGGGTGGCACATCT
AGAGGAGGAAAACAGTAGCCTACGCGAGCTGGTGGAGGACCTACGGGCTGCGCTGCAGAGCAGTGACGCG
CGTTGCCTGGCCCTTCAGGTCGGCCTCTGGAAAAGCCAGTCGGACATCCCAGAAGCGGCGGCGCACGAGC
TGCAGCGAGCGCAGGGCGCGCTGGCAGAGGCGGAGGCGCGCGCCCGGCGGCTGCAGCGCGGACAGGTGGA
GGTGCGGCTGCGCACCGAGGAGGCTCGGCAGGCGGTGCGACGCAGCTTGCACCGAGTGCGGGAGCTGGAG
GCGCTGGCGCGGCGTGTCCCCTGCTTGCAGCGCCAGGTGCAGCGACTGGAGGCAGAGCTTAGAGGTTACA
GGTCGGAAGGGCCTCAGCTCCTAACACCCCAACAAGCCAGTCCAAGGCCAGGAAACAGGAATGGCGAACC
TACTGCTGGAGGAACCAGAGATTCGGACACTACTCCAGAGGGAGTCCAGCGGTCAGACAGCAGAGACACA
GATGAAGAGGATGAGCAGCTGTTCCGCTCCGTGGAAGGCCAGGCCGCCTCTGAGGAGGAAGAGGAAGAAA
GGTGGCAGGAAAAGCCAGGGCGCCCACAGGCCCATGGTGAGGTACCCCTGGTGCAACCCTCAGGCTGTGT
GAGTAGGTGTGACGACCAGACAGCTGAGACGCTCAAGGCTTCCTTTGGCCACTGTGATGGTGCTGAGCAC
ATCTGCACCCTAGAGCTGGAAACCCATGTCACCAGGCTTGGCGAACAGCTGCAGACCCTGGGGACACCGG
AGGAGGAGGCAGAACTACAGCAGATGGTGGAAGCTGAGCATCTGAGGCTAGAGCTGCAGATGGTGGAGAC
AGAGAGGGTCCGGCTGTCGCTGCTGGAAGAAAAGCTGGTGGATGTGCTACAACTCCTGCAAAGGCTCCGG
GACCTGAACATATCAAAAAGAGCCCTGGGGAAGATGTTGCTGAATGCCCTGGACCGGAACCCCTCACAGG
AGGGTACATGTGGCACCTTGGCCATCCTGGACACCTTGCACCAAGCTTTGGTTGGCTGTGAGCTCCTACA
GAGAAATCCCTCGGCACCAGCATCCACAGCTCCTGCACACACGAACCCCTTCCTCATCTCCTGCTGA

Translation (558 aa):
MESSAGDPYRRPARRTQWLLSALAHHYGLDRGVENEIVVLATGLDQYLQEVFHHLDCRGAGRLPRADFRA
LCAVLGLNADGETATEDANSAEAASTNPAAGMIAGGDADVREEARLALRADPPELTFRQFHARLCGYFSS
RAGPRLPRGALSEHIETQIRLRRPRRRRRPGSPSLHGGAYGERVAHLEEENSSLRELVEDLRAALQSSDA
RCLALQVGLWKSQSDIPEAAAHELQRAQGALAEAEARARRLQRGQVEVRLRTEEARQAVRRSLHRVRELE
ALARRVPCLQRQVQRLEAELRGYRSEGPQLLTPQQASPRPGNRNGEPTAGGTRDSDTTPEGVQRSDSRDT
DEEDEQLFRSVEGQAASEEEEEERWQEKPGRPQAHGEVPLVQPSGCVSRCDDQTAETLKASFGHCDGAEH
ICTLELETHVTRLGEQLQTLGTPEEEAELQQMVEAEHLRLELQMVETERVRLSLLEEKLVDVLQLLQRLR
DLNISKRALGKMLLNALDRNPSQEGTCGTLAILDTLHQALVGCELLQRNPSAPASTAPAHTNPFLISC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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