NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51832.1 Public Mus musculus 6 Tgfa 23 108 98 CCDS HistoryNCBI Gene:21802Re-query CCDS DB by CCDS ID:51832.1Re-query CCDS DB by GeneID:21802See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032066.12 ENSMUSP00000032066.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032066.12Link to Ensembl Protein Viewer:ENSMUSP00000032066.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032066Re-query CCDS DB by Protein ID:ENSMUSP00000032066
Original member NCBI NM_031199.4 NP_112476.1 Updated not alive Link to Nucleotide Sequence:NM_031199.4Link to Protein Sequence:NP_112476.1Re-query CCDS DB by Nucleotide ID:NM_031199Re-query CCDS DB by Protein ID:NP_112476
Current member NCBI NM_031199.5 NP_112476.1 Accepted alive Link to Nucleotide Sequence:NM_031199.5Link to Protein Sequence:NP_112476.1Re-query CCDS DB by Nucleotide ID:NM_031199Re-query CCDS DB by Protein ID:NP_112476Link to BLAST:NP_112476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112476.1 159 P48030 159 100% 0 0

Chromosomal Locations for CCDS 51832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86195506 86195545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86229431 86229484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86263159 86263276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86269930 86270079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86271380 86271489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86271948 86271955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGTCCCCGCGACCGGACAGCTCGCTCTGCTAGCGCTGGGTATCCTGTTAGCTGTGTGCCAGGCTCTGG
AGAACAGCACATCCCCCCTGAGTGACTCACCCGTGGCGGCTGCAGTGGTGTCTCACTTCAACAAGTGCCC
AGATTCCCACACTCAGTACTGCTTCCATGGAACCTGCCGGTTTTTGGTGCAGGAAGAGAAGCCAGCATGT
GTCTGCCACTCTGGGTACGTGGGTGTTCGCTGTGAGCATGCAGACCTCCTGGCTGTGGTGGCTGCCAGCC
AGAAGAAGCAAGCCATCACTGCCCTGGTGGTGGTCTCCATTGTGGCCCTGGCTGTCCTCATTATCACCTG
TGTGCTGATCCACTGCTGTCAGCTCCGCAAACACTGTGAGTGGTGCCGTGCCCTCGTCTGCAGACATGAG
AAGCCCAGCGCCCTCCTGAAGGGAAGGACTGCTTGCTGCCACTCTGAGACAGTGGTCTGA

Translation (159 aa):
MVPATGQLALLALGILLAVCQALENSTSPLSDSPVAAAVVSHFNKCPDSHTQYCFHGTCRFLVQEEKPAC
VCHSGYVGVRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQLRKHCEWCRALVCRHE
KPSALLKGRTACCHSETVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH