NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51764.1 Public Mus musculus 6 Zfp467 23 108 98 CCDS HistoryNCBI Gene:68910Re-query CCDS DB by CCDS ID:51764.1Re-query CCDS DB by GeneID:68910See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114560.7 ENSMUSP00000110207.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114560.7Link to Ensembl Protein Viewer:ENSMUSP00000110207.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114560Re-query CCDS DB by Protein ID:ENSMUSP00000110207
Original member Current member EBI ENSMUST00000114561.8 ENSMUSP00000110208.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114561.8Link to Ensembl Protein Viewer:ENSMUSP00000110208.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114561Re-query CCDS DB by Protein ID:ENSMUSP00000110208
Original member Current member NCBI NM_001085415.1 NP_001078884.1 Accepted alive Link to Nucleotide Sequence:NM_001085415.1Link to Protein Sequence:NP_001078884.1Re-query CCDS DB by Nucleotide ID:NM_001085415Re-query CCDS DB by Protein ID:NP_001078884Link to BLAST:NP_001078884.1
Original member Current member NCBI NM_020589.2 NP_065614.2 Accepted alive Link to Nucleotide Sequence:NM_020589.2Link to Protein Sequence:NP_065614.2Re-query CCDS DB by Nucleotide ID:NM_020589Re-query CCDS DB by Protein ID:NP_065614Link to BLAST:NP_065614.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078884.1 594 Q8JZL0 594 100% 0 0
NP_065614.2 594 Q8JZL0 594 100% 0 0

Chromosomal Locations for CCDS 51764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48437932 48439454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48441947 48442060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48442625 48442738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48443412 48443445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGAGAGAGACCCTGGAGGCCCTGAACTCCTTGGGATTCTCAGTGGGACAGCCAGAGATGGCTCCCCAGA
GTGAGCCCAGGGATGGGTTCAGTAATGCCCAGGAGAAGATGTCATCCAGAGGAGAGAGCACACTGCACTC
CTGCTCAGGGCATGAGACTCCTGGCCAGAAAGAAGGCATCCACACAGAACAAGCTGAAGCTCCTTGTATG
GGCAGCCAGGCCAGTACCCCACAGAAGGCCGAACCTGCAGGCTCTGTCCCAGGGGAGGAATGGATGATTC
GGAAGGTGAAGGTAGAGGATGAGGATCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTT
CCTTCCCAGTCCTTTTCCCACTCCTGACTTGGGTCAGTTGGCTGTTACGTACAAACTGGAGCCAGGGACT
CCGGGAGCACTAGGTGGAATCGCGCTGTCCGGGTGGGCCCCGATCCCTGAGAAGCCTTATGGCTGCGAGG
AATGCGAGCGGCGTTTCCGGGATCAGCTAACTCTGCGGCTCCACCAGAGGTTGCACCGGGGTGAGGGTCC
TTGTGCCTGCCCGGACTGTGGCCGCAGCTTCACGCAGCGTGCTCATATGCTCCTGCACCAACGCAGCCAC
CGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGACAAGCGCTTCAGCAAGAAGGCCCACCTGACCCGCC
ACCTGCGCACGCACACTGGCGAGCGTCCCTACCCGTGCGCTGAGTGCGGCAAACGCTTCAGCCAGAAGAT
TCACCTAGGCTCGCATCAGAAGACCCACACCGGAGAGCGGCCCTTCCCCTGCACCGAATGCGAGAAACGT
TTCCGCAAGAAGACGCATCTGATCCGCCACCAGCGTATCCACACCGGCGAGAGGCCCTACCAGTGCACCC
AGTGCACGCGCAGCTTCACACACAAGCAACACCTGGTGCGGCACCAGAGGGTGCACGATGCTGCTAGCCG
CACCCGGTCCTCTCCAGACATTCCTGTTGCTCCCCATTCCCCCACCGCGTCTCTTACCCCGTCCCCTCCT
GGGCCCAAGCCTTTCGCTTGTTCCCACTGCGGGCAGAGCTTCGGCTGGAAAAAGAACCTCGCTACGCACC
AGAGTCTGCATCTCACCGAGGGTCGTCCTTTTGGGTGCGATGAATGTGCACTCGGCACCAACGTGGACCC
CGCCGCCGAGCCCTCGGCCTGCACTCCCCATGCGCCTGACTGTGGACCGGGTTCGGGGCCCGCGGCACCC
CAGCGCACCACCTCCAGCGAGCGCTCCTTCTTCTGCCCGGACTGCGGGCGAGGCTTTGCCCACGGGCAGC
ACCTGGCCCGCCACCGGCGGGTGCACACGGGCGAAAGGCCATTTGCCTGTGCTCAGTGTGGCCGCCGCTT
CGGCTCACGACCCAATCTAGTCGCCCACTCCCGGGCCCATAGCGGCGCCAGACCTTTTGCCTGTGCGCAA
TGTGGCCGCCGCTTCAGTCGCAAATCTCACCTGGGCCGCCACCAGGCAGTGCACACTGGTAGTCGCCCCC
ACGCCTGCGCCGTCTGCGCCCGCTGCTTCAGCTCTAAAACCAACCTGGTCCGCCATCAGGCAATCCATAC
AGGTTCCCGCCCCTTTTCCTGCCCTCAGTGCGCCAAGAGCTTCAGCCGCAAGACCCATCTGGTGCGGCAC
CAACGCATCCATGGGGACGCGGCCCTCCCAGCCCCAGCCTCGAACCTCTCTGCTCCAGCCTGGTCCAATC
CCTCCGAGGTGGTACCACCTCCAATCTTTTTCTAA

Translation (594 aa):
MRETLEALNSLGFSVGQPEMAPQSEPRDGFSNAQEKMSSRGESTLHSCSGHETPGQKEGIHTEQAEAPCM
GSQASTPQKAEPAGSVPGEEWMIRKVKVEDEDQEAEEEVEWPQHLSFLPSPFPTPDLGQLAVTYKLEPGT
PGALGGIALSGWAPIPEKPYGCEECERRFRDQLTLRLHQRLHRGEGPCACPDCGRSFTQRAHMLLHQRSH
RGERPFPCSECDKRFSKKAHLTRHLRTHTGERPYPCAECGKRFSQKIHLGSHQKTHTGERPFPCTECEKR
FRKKTHLIRHQRIHTGERPYQCTQCTRSFTHKQHLVRHQRVHDAASRTRSSPDIPVAPHSPTASLTPSPP
GPKPFACSHCGQSFGWKKNLATHQSLHLTEGRPFGCDECALGTNVDPAAEPSACTPHAPDCGPGSGPAAP
QRTTSSERSFFCPDCGRGFAHGQHLARHRRVHTGERPFACAQCGRRFGSRPNLVAHSRAHSGARPFACAQ
CGRRFSRKSHLGRHQAVHTGSRPHACAVCARCFSSKTNLVRHQAIHTGSRPFSCPQCAKSFSRKTHLVRH
QRIHGDAALPAPASNLSAPAWSNPSEVVPPPIFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH