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Report for CCDS51739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51739.1 Public Mus musculus 6 Nrf1 23 108 98 CCDS HistoryNCBI Gene:18181Re-query CCDS DB by CCDS ID:51739.1Re-query CCDS DB by GeneID:18181See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51739.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069831.14 ENSMUSP00000067447.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069831.14Link to Ensembl Protein Viewer:ENSMUSP00000067447.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069831Re-query CCDS DB by Protein ID:ENSMUSP00000067447
Original member Current member EBI ENSMUST00000115199.7 ENSMUSP00000110853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115199.7Link to Ensembl Protein Viewer:ENSMUSP00000110853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115199Re-query CCDS DB by Protein ID:ENSMUSP00000110853
Original member NCBI NM_001164229.1 NP_001157701.1 Updated not alive Link to Nucleotide Sequence:NM_001164229.1Link to Protein Sequence:NP_001157701.1Re-query CCDS DB by Nucleotide ID:NM_001164229Re-query CCDS DB by Protein ID:NP_001157701
Current member NCBI NM_001164229.2 NP_001157701.1 Accepted alive Link to Nucleotide Sequence:NM_001164229.2Link to Protein Sequence:NP_001157701.1Re-query CCDS DB by Nucleotide ID:NM_001164229Re-query CCDS DB by Protein ID:NP_001157701Link to BLAST:NP_001157701.1

Chromosomal Locations for CCDS 51739.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30089924 30090146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30090269 30090304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30095340 30095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30098449 30098575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30102169 30102309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30115013 30115171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30116096 30116293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30117056 30117157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30118949 30119106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30126235 30126359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30129181 30129392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGAGGAGCACGGAGTGACCCAAACTGAACACATGGCTACCATAGAAGCCCATGCAGTGGCCCAGCAAG
TCCAGCAGGTCCATGTAGCCACGTACACTGAGCACAGTATGCTAAGTGCTGATGAAGACTCCCCTTCCTC
CCCCGAGGACACTTCTTATGATGACTCGGACATCCTCAACTCCACGGCAGCTGATGAGGTAACTGCCCAT
CTGGCTGCTGCAGTGCTGGGGATCAAACCCAGGGCCTCGCATATACTAGGTCCTGTGGGAATGGCCGCTG
CTGCTGCTGTGGCAACAGGGAAGAAACGGAAACGGCCTCATGTGTTTGAGTCTAATCCATCTATCCGAAA
GAGACAGCAGACACGTTTGCTTCGGAAACTCAGAGCCACGTTGGATGAGTACACGACGCGAGTGGGACAG
CAAGCGATTGTACTCTGCATCTCACCCTCCAAACCCAACCCTGTCTTCAAGGTGTTTGGCGCAGCACCTT
TGGAGAATGTGGTGCGAAAGTACAAGAGCATGATCCTGGAAGACCTCGAGTCTGCTCTGGCAGAACACGC
CCCTGCGCCACAGGAGGTTAATTCAGAGCTGCCGCCTCTCACCATCGATGGGATTCCAGTCTCTGTGGAC
AAAATGACCCAGGCTCAGCTTCGGGCATTTATCCCAGAGATGCTCAAGTATTCCACAGGTCGGGGGAAAC
CAGGCTGGGGGAAAGAAAGCTGCAAGCCTATCTGGTGGCCAGAAGATATCCCATGGGCCAATGTCCGCAG
TGATGTCCGCACAGAAGAGCAAAAACAAAGGGTTTCATGGACCCAGGCATTACGGACCATAGTTAAAAAT
TGCTATAAGCAACATGGGCGGGAGGATCTTTTATATGCTTTTGAAGATCAGCAAACACAAACTCAGGCCA
CCACCACACACAGTATAGCTCATCTCGTACCATCACAGACCGTAGTACAGACCTTCAGCAACCCTGATGG
CACCGTGTCGCTCATCCAGGTTGGTACAGGGGCAACAGTAGCCACATTGGCTGATGCTTCAGAACTGCCA
ACCACAGTCACTGTTGCCCAAGTGAATTACTCTGCTGTGGCTGATGGAGAGGTGGAACAAAACTGGGCCA
CGTTACAGGGCGGTGAAATGACCATCCAGACGACGCAAGCATCAGAGGCCACCCAGGCGGTAGCATCACT
GGCAGAAGCCGCAGTGGCAGCTTCTCAGGAGATGCAGCAGGGAGCCACTGTCACCATGGCCCTCAACAGT
GAAGCTGCCGCCCATGCTGTCGCCACTCTGGCGGAAGCCACCTTACAAGGTGGGGGACAGATAGTCCTGT
CTGGGGAAACCGCAGCAGCCGTCGGAGCACTTACTGGAGTCCAAGATGCTAATGGCCTCGGATCCCCTGT
GCTTCCAGAAATCATGGCCTCCAAGACCAGAGGATACAGGCACTCTTGTGGGAGAGACCTTTATAGGCTT
TTCTCCTTTTTCCTATTATACAGCAAAAATAATGAAAGGATTCTGTTGGCTCCTGCTACCTCAGGCAGCC
CCTGCTTTTATGTCAGAAATATTATCACAATTCGTGTGGGTATCTTATCTTCCTAA

Translation (531 aa):
MEEHGVTQTEHMATIEAHAVAQQVQQVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAH
LAAAVLGIKPRASHILGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQ
QAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVNSELPPLTIDGIPVSVD
KMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKN
CYKQHGREDLLYAFEDQQTQTQATTTHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLADASELP
TTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNS
EAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDANGLGSPVLPEIMASKTRGYRHSCGRDLYRL
FSFFLLYSKNNERILLAPATSGSPCFYVRNIITIRVGILSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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