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Report for CCDS5162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5162.1 Public Homo sapiens 6 VNN2 24 110 108 CCDS HistoryNCBI Gene:8875Re-query CCDS DB by CCDS ID:5162.1Re-query CCDS DB by GeneID:8875See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525270.5 ENSP00000436822.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525270.5Link to Ensembl Protein Viewer:ENSP00000436822.1Re-query CCDS DB by Nucleotide ID:ENST00000525270Re-query CCDS DB by Protein ID:ENSP00000436822
Original member Current member NCBI NM_078488.3 NP_511043.2 Accepted alive Link to Nucleotide Sequence:NM_078488.3Link to Protein Sequence:NP_511043.2Re-query CCDS DB by Nucleotide ID:NM_078488Re-query CCDS DB by Protein ID:NP_511043Link to BLAST:NP_511043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_511043.2 467 O95498-6 467 100% 0 0

Chromosomal Locations for CCDS 5162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132744300 132744491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132749695 132749865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132751145 132751518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132752461 132752749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132755843 132756035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132757416 132757546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132757671 132757724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGAACGAGAATATAGACATTCTGGAGACAGCGATCAAGCAGGCAGCTGAGCAGGGTGCTCGAATCATTG
TGACTCCAGAAGATGCACTTTATGGATGGAAATTTACCAGGGAAACTGTTTTCCCTTATCTGGAGGATAT
CCCAGACCCTCAGGTGAACTGGATTCCGTGTCAAGACCCCCACAGATTTGGTCACACACCAGTACAAGCA
AGACTCAGCTGCCTGGCCAAGGACAACTCTATCTATGTCTTGGCAAATTTGGGGGACAAAAAGCCATGTA
ATTCCCGTGACTCCACATGTCCTCCTAATGGCTACTTTCAATACAATACCAATGTGGTGTATAATACAGA
AGGAAAACTCGTGGCACGTTACCATAAGTACCACCTGTACTCTGAGCCTCAGTTTAATGTCCCTGAAAAG
CCGGAGTTGGTGACTTTCAACACCGCATTTGGAAGGTTTGGCATTTTCACGTGCTTTGATATATTCTTCT
ATGATCCTGGTGTTACCCTGGTGAAAGATTTCCATGTGGACACCATACTGTTTCCCACAGCTTGGATGAA
CGTTTTGCCCCTTTTGACAGCTATTGAATTCCATTCAGCTTGGGCAATGGGAATGGGAGTTAATCTTCTT
GTGGCCAACACACATCATGTCAGCCTAAATATGACAGGAAGTGGTATTTATGCACCAAATGGTCCCAAAG
TGTATCATTATGACATGAAGACAGAGTTGGGAAAACTTCTCCTTTCAGAGGTGGATTCACATCCCCTATC
CTCGCTTGCCTACCCAACAGCTGTTAATTGGAATGCCTACGCCACCACCATCAAACCATTTCCAGTACAG
AAAAACACTTTCAGGGGATTTATTTCCAGGGATGGGTTCAACTTCACAGAACTTTTTGAAAATGCAGGAA
ACCTTACAGTCTGTCAAAAGGAGCTTTGCTGTCATTTAAGCTACAGAATGTTACAAAAAGAAGAGAATGA
AGTATACGTTCTAGGAGCTTTTACAGGATTACATGGCCGAAGGAGAAGAGAGTACTGGCAGGTCTGCACA
CTGCTGAAGTGCAAAACTACTAATTTGACAACTTGTGGACGGCCAGTAGAAACTGCTTCTACAAGATTTG
AAATGTTCTCCCTCAGTGGCACATTTGGAACAGAGTATGTTTTTCCTGAAGTGCTACTTACCGAAATTCA
TCTGTCACCTGGAAAATTTGAGGTGCTGAAAGATGGGCGTTTGGTAAACAAGAATGGATCATCTGGGCCT
ATACTAACAGTGTCACTCTTTGGGAGGTGGTACACAAAGGACTCACTTTACAGCTCATGTGGGACCAGCA
ATTCAGCAATAACTTACCTGCTAATATTCATATTATTAATGATCATAGCTTTGCAAAATATTGTAATGTT
ATAG

Translation (467 aa):
MNENIDILETAIKQAAEQGARIIVTPEDALYGWKFTRETVFPYLEDIPDPQVNWIPCQDPHRFGHTPVQA
RLSCLAKDNSIYVLANLGDKKPCNSRDSTCPPNGYFQYNTNVVYNTEGKLVARYHKYHLYSEPQFNVPEK
PELVTFNTAFGRFGIFTCFDIFFYDPGVTLVKDFHVDTILFPTAWMNVLPLLTAIEFHSAWAMGMGVNLL
VANTHHVSLNMTGSGIYAPNGPKVYHYDMKTELGKLLLSEVDSHPLSSLAYPTAVNWNAYATTIKPFPVQ
KNTFRGFISRDGFNFTELFENAGNLTVCQKELCCHLSYRMLQKEENEVYVLGAFTGLHGRRRREYWQVCT
LLKCKTTNLTTCGRPVETASTRFEMFSLSGTFGTEYVFPEVLLTEIHLSPGKFEVLKDGRLVNKNGSSGP
ILTVSLFGRWYTKDSLYSSCGTSNSAITYLLIFILLMIIALQNIVML


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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