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Report for CCDS51552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51552.1 Public Mus musculus 5 Pramel34 23 108 98 CCDS HistoryNCBI Gene:381654Re-query CCDS DB by CCDS ID:51552.1Re-query CCDS DB by GeneID:381654See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51552.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162964.7 ENSMUSP00000124780.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162964.7Link to Ensembl Protein Viewer:ENSMUSP00000124780.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162964Re-query CCDS DB by Protein ID:ENSMUSP00000124780
Original member Current member NCBI NM_001164284.2 NP_001157756.1 Accepted alive Link to Nucleotide Sequence:NM_001164284.2Link to Protein Sequence:NP_001157756.1Re-query CCDS DB by Nucleotide ID:NM_001164284Re-query CCDS DB by Protein ID:NP_001157756Link to BLAST:NP_001157756.1

Chromosomal Locations for CCDS 51552.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93636176 93636743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93637560 93638150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93638640 93638908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGAGTGGTCAGACCCCACCCACACACACTCTGCTGACACATGAAGCTTTGATCATGTCCTCTCTGGAGG
AGTTGCCTACTGTGGTCTTCCCAGCACTATTCAAAGAGGCCTTTGCTGGCAGACACACCAATCTCCTAAA
GGCAATGGTGGCAGCCTGGCCTTTCCCCTGTCTCCCTGTGGGGCCATTGATGAAGAAGCCTAACCTAGAA
ACCTTGCAAGCCCTGCTAGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAGGAGGGCAAAAC
TTCAGGTTCTTGACATGAGAAATATGTACCATGCCTTCTGGAACATACGGGCTGATGCAAATGACAGTGA
CTGTAAATCAAAGACATTGGATGAAAAGCAGCTAGTGAAGGTCCTTCCGAGATATGCACGGAGGCAGCGT
CTGAAGGTCATAGTCAACCTGTCAATCAGTTCCCACTTCAATAAATCAAAGGCATATTTCTTGAATTGGG
CCAAGCAGAGAATAGGATCCCTATATTTCTGCTGTATAAAGATGAGGATCTGGGACCCACCAGACCAAGT
TATCAGAGACATCTTTAATGTTTTTGATCCAGAGCACATCACAGAATTAGAACTGAATACTGACTGGACT
CTGTTACAGCTTGCACATTTTGCTTCCTACTTTGGGCACATGAAAAATCTTCAAAAAGTCTTCCTGGCAC
CACTCCACAAGAATACATCCCCTATTATCAATATAACAAATGCCACAGAAGCCAAGTGTGTTCATAAAAT
TATTTCTCAGTTTTCCCAATTCAACTGTCTCCAGCATATCTTCATGAAACACGTCCATTTTCTAAGAGAC
TACATGAATCAGGTCCTAGGGTGCCTGATGACACCCTTGGAGACCCTCTCCATCACTCAATGCCTAATTT
CACAGAGAGACTTTGATTTATTTTCCTGCTCCCAAAACCTCTTTAAATTAAAACATCTGGAAATAAGAGG
GATGATCTTATATGCTTTGGATCTTATGCCTCTGAGAGTTCTCCTAGAAAAAGTAGCAGACACTCTTGAG
ATTCTGGATTTTCAGTGGTGTAGGATGAAGGACTCCCAGATCAATGCCCTCCTACCTGCCCTCAGTCAAT
GTACTCAGCTCAACCAGATCAACTTCTACAACAATGACTTCTCCATGTGCACCCTGAAGGCCCTTTTCCA
GCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGCAGTGCTATAGTGAGTTG
GGTCATGTCTCTGTAGAAAGATTTGTCCAACTTTGTCAGGAGCTCATGTATACTCTCAGAGCTATAAGGC
AGCCCAAGAGCATCTCTTTTGCTACAGATAACTGTCAAAAATGTGGTAAGCCCTGTGTCTATGACCAGGG
CCCAATACTTTGTTCTTGTTTTCAGTAA

Translation (475 aa):
MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLE
TLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQR
LKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWT
LLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRD
YMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLE
ILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSEL
GHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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