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Report for CCDS51461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51461.1 Public Mus musculus 5 Babam2 23 108 98 CCDS HistoryNCBI Gene:107976Re-query CCDS DB by CCDS ID:51461.1Re-query CCDS DB by GeneID:107976See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114507.9 ENSMUSP00000110152.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114507.9Link to Ensembl Protein Viewer:ENSMUSP00000110152.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114507Re-query CCDS DB by Protein ID:ENSMUSP00000110152
Original member Current member NCBI NM_181281.1 NP_851798.1 Accepted alive Link to Nucleotide Sequence:NM_181281.1Link to Protein Sequence:NP_851798.1Re-query CCDS DB by Nucleotide ID:NM_181281Re-query CCDS DB by Protein ID:NP_851798Link to BLAST:NP_851798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851798.1 319 Q8K3W0-6 319 100% 0 0

Chromosomal Locations for CCDS 51461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31702091 31702103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31785578 31785672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31820478 31820672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31831085 31831159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31901055 31901164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32001361 32001460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32004710 32004780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32007235 32007317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32057511 32057664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32084581 32084644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGTGTGCCTGTAGGGACATAATTTTCAATGCTCAGTACCCAGAGCTGCCTCCTGATTTCATCTTTGGAG
AGGATGCTGAGTTTCTGCCAGACCCCTCTGCGCTGCACAACCTTGCCTCCTGGAACCCTTCAAACCCTGA
GTGCCTGTTGCTCGTGGTGAAGGAGCTGGTGCAGCAGTACCACCAGTTCCAGTGCGGCCGCCTCCGTGAG
AGCTCGCGCCTCATGTTTGAGTACCAGACGCTCCTGGAAGAGCCTCAGTATGGAGAGAACATGGAAATTT
ATGCTGGAAAGAAAAACAACTGGACTGGTGAATTTTCAGCTCGTTTTCTATTGAAGTTACCAGTAGATTT
CAGCAACATTCCCACATACCTTCTCAAGGATGTAAATGAAGACCCTGGAGAAGATGTGGCCCTTCTTTCT
GTCAGTTTTGAGGATACTGAAGCTACCCAGGTGTACCCCAAGTTGTACTTGTCACCCCGAATTGAGCATG
CACTCGGAGGCTCCTCTGCTCTTCACATCCCTGCTTTCCCCGGAGGAGGATGTCTCATTGATTATGTGCC
TCAAGTGTGCCACCTGCTCACCAACAAGGTACAGTATGTGATTCAAGGCTATCACAAAAGAAGAGAGTAC
ATCGCAGCTTTCCTCAGTCACTTTGGCACAGGTGTCGTGGAATATGATGCAGAAGGCTTCACAAAACTTA
CTCTGCTGCTGATGTGGAAAGACTTTTGTTTTCTTGTCCACATTGACCTGCCCCTGTTTTTCCCTCGAGA
TCAGCCTACGCTCACATTTCAGTCAGTCTATCACTTTACCAACAGTGGACAGCTTTACTCCCAAGCACAA
AAAAACTACCCATACAGCCCCAGATGGGATGGAAATGAAATGGCCAAGAGAGCAAAGGCTTATTTCAAAA
CCTTTGTCCCTCAGTTCCAGGAGGCCGCATTTGCCAATGGAAAGCTCTAG

Translation (319 aa):
MCACRDIIFNAQYPELPPDFIFGEDAEFLPDPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRE
SSRLMFEYQTLLEEPQYGENMEIYAGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLS
VSFEDTEATQVYPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREY
IAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQLYSQAQ
KNYPYSPRWDGNEMAKRAKAYFKTFVPQFQEAAFANGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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