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Report for CCDS5142.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5142.2 Public Homo sapiens 6 AKAP7 24 110 108 CCDS HistoryNCBI Gene:9465Re-query CCDS DB by CCDS ID:5142.2Re-query CCDS DB by GeneID:9465See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 5142.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5142.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431975.7 ENSP00000405252.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000431975.7Link to Ensembl Protein Viewer:ENSP00000405252.2Re-query CCDS DB by Nucleotide ID:ENST00000431975Re-query CCDS DB by Protein ID:ENSP00000405252
Original member Current member NCBI NM_016377.4 NP_057461.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016377.4Link to Protein Sequence:NP_057461.2Re-query CCDS DB by Nucleotide ID:NM_016377Re-query CCDS DB by Protein ID:NP_057461Link to BLAST:NP_057461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057461.2 348 Q9P0M2-1 348 100% 0 0

Chromosomal Locations for CCDS 5142.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 131135764 131135782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131145285 131145416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131160059 131160198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131165081 131165217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131169113 131169273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131199461 131199573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131219661 131219808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 131281530 131281726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGAGCGCCCCGAAGCGGGAGGAATTAATTCCAATGAGTGTGAAAATGTATCAAGAAAAAAGAAAATGT
CAGAGGAATTTGAAGCCAATACTATGGATTCTCTGGTAGACATGCCATTTGCTACTGTAGATATTCAGGA
TGACTGTGGAATCACTGATGAACCTCAAATAAATTTGAAGAGAAGTCAAGAAAATGAATGGGTCAAGAGT
GATCAAGTAAAGAAGAGGAAAAAAAAGAGAAAAGATTATCAACCCAACTATTTCCTGTCCATTCCAATCA
CCAACAAAGAGATTATAAAAGGAATTAAGATCCTGCAGAATGCAATAATACAACAAGATGAGCGACTGGC
CAAAGCAATGGTCAGTGATGGTTCCTTTCATATTACCCTGCTGGTGATGCAATTATTAAATGAAGATGAA
GTAAACATTGGTATTGATGCTCTTTTGGAATTGAAACCATTCATAGAAGAACTCCTCCAGGGAAAACATT
TGACTTTGCCCTTTCAAGGGATTGGTACTTTTGGAAATCAGGTTGGATTTGTGAAGCTGGCAGAAGGAGA
TCATGTAAACTCACTTTTGGAGATAGCAGAGACTGCAAATAGGACATTTCAAGAAAAAGGCATCCTGGTA
GGAGAGAGCAGAAGTTTTAAACCTCATTTGACCTTCATGAAGTTGTCAAAATCACCGTGGCTCCGTAAGA
ATGGAGTGAAAAAAATAGATCCTGATTTATATGAAAAGTTTATCAGTCACAGATTTGGAGAAGAAATATT
ATATCGCATAGATCTTTGCTCCATGCTGAAGAAAAAACAAAGTAATGGTTATTATCACTGTGAATCTTCC
ATTGTGATTGGTGAAAAGAACGGAGGGGAGCCCGATGACGCTGAACTAGTAAGGCTCAGTAAGAGGCTGG
TGGAGAACGCGGTGCTCAAGGCTGTCCAGCAGTATCTGGAGGAAACACAGAATAAAAACAAGCCGGGGGA
GGGGAGCTCTGTGAAAACCGAAGCAGCTGATCAGAATGGCAATGACAATGAGAACAACAGGAAATGA

Translation (348 aa):
MERPEAGGINSNECENVSRKKKMSEEFEANTMDSLVDMPFATVDIQDDCGITDEPQINLKRSQENEWVKS
DQVKKRKKKRKDYQPNYFLSIPITNKEIIKGIKILQNAIIQQDERLAKAMVSDGSFHITLLVMQLLNEDE
VNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGNQVGFVKLAEGDHVNSLLEIAETANRTFQEKGILV
GESRSFKPHLTFMKLSKSPWLRKNGVKKIDPDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESS
IVIGEKNGGEPDDAELVRLSKRLVENAVLKAVQQYLEETQNKNKPGEGSSVKTEAADQNGNDNENNRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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