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Report for CCDS51351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51351.1 Public Mus musculus 4 Lrrc38 23 108 98 CCDS HistoryNCBI Gene:242735Re-query CCDS DB by CCDS ID:51351.1Re-query CCDS DB by GeneID:242735See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052458.2 ENSMUSP00000053597.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052458.2Link to Ensembl Protein Viewer:ENSMUSP00000053597.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052458Re-query CCDS DB by Protein ID:ENSMUSP00000053597
Original member Current member NCBI NM_001162983.1 NP_001156455.1 Accepted alive Link to Nucleotide Sequence:NM_001162983.1Link to Protein Sequence:NP_001156455.1Re-query CCDS DB by Nucleotide ID:NM_001162983Re-query CCDS DB by Protein ID:NP_001156455Link to BLAST:NP_001156455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156455.1 298 A2VDH3 298 100% 0 0

Chromosomal Locations for CCDS 51351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143350169 143350811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143369764 143370017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGAGTCTCTGCGTTGCCCCCCGCCACCCCACGGGCGCTGCTGCGGCGCTGGGGCTCGGTAGCCTCTTGG
TGCTGCTCGGGCCGGGACGCGCGTGCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCGTGGACTGTCG
CGATCGCGGGCTGCCCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAAC
CGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTATCTGGATTTCAGGAACA
ACTCGCTGCGCTCGCTGGAGGAGGGCACGTTCAGCGGCTCGGGCAAGCTGGCCTTTCTGGACCTGAGCTA
CAACAACCTCACCCAGCTGGGGGCCGGCGCCTTCCGCTCGGCGGGGAGGCTGGTCAAGCTGAGCCTGGCC
AACAACCATCTGGCCGGTGTACATGAGGCTGCCTTCGAGAGCCTGGAGTCCTTGCAGGTGCTGGAACTCA
ACGACAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCACTGTGCGCCT
GGACGGGAACCCCTGGCTGTGTGACTGTGACTTCGCTCACCTCTTCTCCTGGATTCAGGAGAACACATCC
AAATTGCCCAAAGGCCTCGATGCCATCCAGTGTTCACTGCCCATGGAGGACCGGAGGGTGGCCCTGAGGG
AGCTATCCGAAGCTAGTTTCAGCGAGTGTAAGTTCAGCCTGTCTCTCACAGACCTATTCATCATCATCTT
CTCTGGGGTGGCTGTGTCCATTGCTGCCATCATCTCCAGCTTCTTCCTGGCCACTGTGGTGCAGTGTTTC
CAGAGGTGCGCCCCTAACAAGGACACGGAAGATGAGGATGATGATGAAGATGACTGA

Translation (298 aa):
MSLCVAPRHPTGAAAALGLGSLLVLLGPGRACPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGN
RIQQIPEDFFIFHGDLVYLDFRNNSLRSLEEGTFSGSGKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLA
NNHLAGVHEAAFESLESLQVLELNDNNLRSLNVAALDALPALRTVRLDGNPWLCDCDFAHLFSWIQENTS
KLPKGLDAIQCSLPMEDRRVALRELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATVVQCF
QRCAPNKDTEDEDDDEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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